Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0296 and EX28DRAFT_0297 overlap by 4 nucleotides EX28DRAFT_0297 and EX28DRAFT_0298 are separated by 8 nucleotides EX28DRAFT_0298 and EX28DRAFT_0299 are separated by 48 nucleotides EX28DRAFT_0299 and EX28DRAFT_0300 are separated by 44 nucleotides
EX28DRAFT_0296: EX28DRAFT_0296 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 258,661 to 259,347
_0296
EX28DRAFT_0297: EX28DRAFT_0297 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 259,344 to 260,060
_0297
EX28DRAFT_0298: EX28DRAFT_0298 - ABC-type histidine transport system, ATPase component, at 260,069 to 260,842
_0298
EX28DRAFT_0299: EX28DRAFT_0299 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 260,891 to 261,400
_0299
EX28DRAFT_0300: EX28DRAFT_0300 - TIGR01777 family protein, at 261,445 to 262,338
_0300
Position (kb) 260
261 Strain fitness (log2 ratio) -2
-1
0
1
2 at 259.191 kb on + strand, within EX28DRAFT_0296 at 259.261 kb on + strand, within EX28DRAFT_0296 at 259.261 kb on + strand, within EX28DRAFT_0296 at 259.262 kb on - strand, within EX28DRAFT_0296 at 259.534 kb on - strand, within EX28DRAFT_0297 at 259.534 kb on - strand, within EX28DRAFT_0297 at 259.557 kb on + strand, within EX28DRAFT_0297 at 259.590 kb on + strand, within EX28DRAFT_0297 at 259.590 kb on + strand, within EX28DRAFT_0297 at 259.591 kb on - strand, within EX28DRAFT_0297 at 259.591 kb on - strand, within EX28DRAFT_0297 at 259.591 kb on - strand, within EX28DRAFT_0297 at 259.592 kb on + strand, within EX28DRAFT_0297 at 259.656 kb on - strand, within EX28DRAFT_0297 at 259.689 kb on + strand, within EX28DRAFT_0297 at 259.835 kb on + strand, within EX28DRAFT_0297 at 259.919 kb on + strand, within EX28DRAFT_0297 at 259.919 kb on + strand, within EX28DRAFT_0297 at 259.920 kb on - strand, within EX28DRAFT_0297 at 259.920 kb on - strand, within EX28DRAFT_0297 at 259.920 kb on - strand, within EX28DRAFT_0297 at 259.932 kb on + strand, within EX28DRAFT_0297 at 259.933 kb on - strand, within EX28DRAFT_0297 at 259.972 kb on - strand, within EX28DRAFT_0297 at 259.975 kb on + strand, within EX28DRAFT_0297 at 259.975 kb on + strand, within EX28DRAFT_0297 at 259.976 kb on - strand, within EX28DRAFT_0297 at 259.976 kb on - strand, within EX28DRAFT_0297 at 259.986 kb on + strand, within EX28DRAFT_0297 at 259.986 kb on + strand, within EX28DRAFT_0297 at 259.986 kb on + strand, within EX28DRAFT_0297 at 259.987 kb on - strand, within EX28DRAFT_0297 at 259.987 kb on - strand, within EX28DRAFT_0297 at 259.987 kb on - strand, within EX28DRAFT_0297 at 260.010 kb on - strand at 260.036 kb on + strand at 260.038 kb on + strand at 260.039 kb on - strand at 260.086 kb on - strand at 260.173 kb on + strand, within EX28DRAFT_0298 at 260.222 kb on - strand, within EX28DRAFT_0298 at 260.273 kb on - strand, within EX28DRAFT_0298 at 260.275 kb on + strand, within EX28DRAFT_0298 at 260.472 kb on - strand, within EX28DRAFT_0298 at 260.840 kb on + strand at 260.841 kb on - strand at 261.136 kb on + strand, within EX28DRAFT_0299 at 261.137 kb on - strand, within EX28DRAFT_0299 at 261.137 kb on - strand, within EX28DRAFT_0299 at 261.137 kb on - strand, within EX28DRAFT_0299 at 261.137 kb on - strand, within EX28DRAFT_0299 at 261.438 kb on - strand at 261.443 kb on - strand at 261.443 kb on - strand at 261.454 kb on + strand at 261.454 kb on + strand at 261.476 kb on - strand at 261.476 kb on - strand at 261.545 kb on - strand, within EX28DRAFT_0300 at 261.652 kb on - strand, within EX28DRAFT_0300 at 261.729 kb on + strand, within EX28DRAFT_0300
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 259,191 + EX28DRAFT_0296 0.77 -0.1 259,261 + EX28DRAFT_0296 0.87 +0.7 259,261 + EX28DRAFT_0296 0.87 -1.0 259,262 - EX28DRAFT_0296 0.87 -0.2 259,534 - EX28DRAFT_0297 0.26 -0.9 259,534 - EX28DRAFT_0297 0.26 -0.1 259,557 + EX28DRAFT_0297 0.30 +0.4 259,590 + EX28DRAFT_0297 0.34 -0.3 259,590 + EX28DRAFT_0297 0.34 +0.1 259,591 - EX28DRAFT_0297 0.34 +0.2 259,591 - EX28DRAFT_0297 0.34 +0.1 259,591 - EX28DRAFT_0297 0.34 -1.5 259,592 + EX28DRAFT_0297 0.35 -1.2 259,656 - EX28DRAFT_0297 0.44 -0.5 259,689 + EX28DRAFT_0297 0.48 -0.0 259,835 + EX28DRAFT_0297 0.68 -1.0 259,919 + EX28DRAFT_0297 0.80 -1.1 259,919 + EX28DRAFT_0297 0.80 +1.6 259,920 - EX28DRAFT_0297 0.80 +0.0 259,920 - EX28DRAFT_0297 0.80 +0.1 259,920 - EX28DRAFT_0297 0.80 -0.2 259,932 + EX28DRAFT_0297 0.82 -0.4 259,933 - EX28DRAFT_0297 0.82 +0.4 259,972 - EX28DRAFT_0297 0.88 -0.1 259,975 + EX28DRAFT_0297 0.88 -0.0 259,975 + EX28DRAFT_0297 0.88 -1.0 259,976 - EX28DRAFT_0297 0.88 +1.9 259,976 - EX28DRAFT_0297 0.88 -0.4 259,986 + EX28DRAFT_0297 0.90 -0.1 259,986 + EX28DRAFT_0297 0.90 +0.1 259,986 + EX28DRAFT_0297 0.90 -0.0 259,987 - EX28DRAFT_0297 0.90 -0.7 259,987 - EX28DRAFT_0297 0.90 +0.8 259,987 - EX28DRAFT_0297 0.90 -0.3 260,010 - -0.8 260,036 + +0.3 260,038 + +0.0 260,039 - +0.2 260,086 - +0.2 260,173 + EX28DRAFT_0298 0.13 +0.2 260,222 - EX28DRAFT_0298 0.20 +0.6 260,273 - EX28DRAFT_0298 0.26 +0.3 260,275 + EX28DRAFT_0298 0.27 +0.2 260,472 - EX28DRAFT_0298 0.52 -2.7 260,840 + -0.0 260,841 - -1.1 261,136 + EX28DRAFT_0299 0.48 +0.4 261,137 - EX28DRAFT_0299 0.48 +0.4 261,137 - EX28DRAFT_0299 0.48 +1.0 261,137 - EX28DRAFT_0299 0.48 +0.5 261,137 - EX28DRAFT_0299 0.48 -0.6 261,438 - +0.7 261,443 - -1.3 261,443 - -0.0 261,454 + -0.4 261,454 + +0.2 261,476 - +0.6 261,476 - +0.1 261,545 - EX28DRAFT_0300 0.11 -0.4 261,652 - EX28DRAFT_0300 0.23 +0.2 261,729 + EX28DRAFT_0300 0.32 +0.2
Or see this region's nucleotide sequence