Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01685 and RR42_RS01690 are separated by 97 nucleotides RR42_RS01690 and RR42_RS01695 are separated by 407 nucleotides RR42_RS01695 and RR42_RS01700 are separated by 82 nucleotides
RR42_RS01685: RR42_RS01685 - alpha/beta hydrolase, at 383,655 to 384,299
_RS01685
RR42_RS01690: RR42_RS01690 - ferredoxin, at 384,397 to 384,717
_RS01690
RR42_RS01695: RR42_RS01695 - C4-dicarboxylate transporter, at 385,125 to 386,426
_RS01695
RR42_RS01700: RR42_RS01700 - ATPase, at 386,509 to 388,494
_RS01700
Position (kb) 385
386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 384.275 kb on + strand at 384.276 kb on - strand at 384.280 kb on - strand at 384.280 kb on - strand at 384.280 kb on - strand at 384.287 kb on + strand at 384.488 kb on + strand, within RR42_RS01690 at 384.489 kb on - strand, within RR42_RS01690 at 384.506 kb on + strand, within RR42_RS01690 at 384.618 kb on - strand, within RR42_RS01690 at 384.639 kb on + strand, within RR42_RS01690 at 384.704 kb on + strand at 384.705 kb on - strand at 384.705 kb on - strand at 384.789 kb on - strand at 384.789 kb on - strand at 384.806 kb on + strand at 384.806 kb on + strand at 384.807 kb on - strand at 384.807 kb on - strand at 384.807 kb on - strand at 384.808 kb on + strand at 384.809 kb on - strand at 385.046 kb on - strand at 385.143 kb on + strand at 385.144 kb on - strand at 385.155 kb on + strand at 385.156 kb on - strand at 385.156 kb on - strand at 385.223 kb on - strand at 385.307 kb on + strand, within RR42_RS01695 at 385.365 kb on + strand, within RR42_RS01695 at 385.485 kb on + strand, within RR42_RS01695 at 385.485 kb on + strand, within RR42_RS01695 at 385.485 kb on + strand, within RR42_RS01695 at 385.595 kb on - strand, within RR42_RS01695 at 385.703 kb on + strand, within RR42_RS01695 at 385.704 kb on - strand, within RR42_RS01695 at 385.704 kb on - strand, within RR42_RS01695 at 385.704 kb on - strand, within RR42_RS01695 at 385.704 kb on - strand, within RR42_RS01695 at 385.759 kb on - strand, within RR42_RS01695 at 385.759 kb on - strand, within RR42_RS01695 at 385.759 kb on - strand, within RR42_RS01695 at 385.806 kb on + strand, within RR42_RS01695 at 385.806 kb on + strand, within RR42_RS01695 at 385.845 kb on - strand, within RR42_RS01695 at 385.890 kb on + strand, within RR42_RS01695 at 385.891 kb on - strand, within RR42_RS01695 at 385.891 kb on - strand, within RR42_RS01695 at 385.990 kb on - strand, within RR42_RS01695 at 386.049 kb on + strand, within RR42_RS01695 at 386.049 kb on + strand, within RR42_RS01695 at 386.049 kb on + strand, within RR42_RS01695 at 386.049 kb on + strand, within RR42_RS01695 at 386.050 kb on - strand, within RR42_RS01695 at 386.050 kb on - strand, within RR42_RS01695 at 386.050 kb on - strand, within RR42_RS01695 at 386.050 kb on - strand, within RR42_RS01695 at 386.050 kb on - strand, within RR42_RS01695 at 386.050 kb on - strand, within RR42_RS01695 at 386.216 kb on + strand, within RR42_RS01695 at 386.477 kb on + strand at 386.749 kb on + strand, within RR42_RS01700 at 386.845 kb on + strand, within RR42_RS01700 at 386.887 kb on + strand, within RR42_RS01700 at 386.887 kb on + strand, within RR42_RS01700 at 386.887 kb on + strand, within RR42_RS01700 at 386.888 kb on - strand, within RR42_RS01700 at 386.888 kb on - strand, within RR42_RS01700 at 386.888 kb on - strand, within RR42_RS01700 at 386.888 kb on - strand, within RR42_RS01700 at 386.888 kb on - strand, within RR42_RS01700 at 386.977 kb on + strand, within RR42_RS01700 at 386.978 kb on - strand, within RR42_RS01700 at 387.030 kb on + strand, within RR42_RS01700 at 387.050 kb on - strand, within RR42_RS01700 at 387.052 kb on + strand, within RR42_RS01700 at 387.052 kb on + strand, within RR42_RS01700 at 387.053 kb on - strand, within RR42_RS01700
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 384,275 + +0.2 384,276 - +0.7 384,280 - +0.5 384,280 - +0.8 384,280 - +0.3 384,287 + +0.1 384,488 + RR42_RS01690 0.28 -1.1 384,489 - RR42_RS01690 0.29 -0.6 384,506 + RR42_RS01690 0.34 -0.2 384,618 - RR42_RS01690 0.69 +0.3 384,639 + RR42_RS01690 0.75 -0.3 384,704 + +1.0 384,705 - -0.4 384,705 - +0.4 384,789 - +0.3 384,789 - +0.1 384,806 + -0.1 384,806 + -0.5 384,807 - +1.7 384,807 - -1.2 384,807 - -1.0 384,808 + +0.1 384,809 - +0.4 385,046 - -0.5 385,143 + -1.8 385,144 - -1.6 385,155 + -1.7 385,156 - -1.4 385,156 - +1.1 385,223 - -1.9 385,307 + RR42_RS01695 0.14 -1.4 385,365 + RR42_RS01695 0.18 -0.5 385,485 + RR42_RS01695 0.28 -0.5 385,485 + RR42_RS01695 0.28 -0.9 385,485 + RR42_RS01695 0.28 -1.2 385,595 - RR42_RS01695 0.36 -1.7 385,703 + RR42_RS01695 0.44 -2.3 385,704 - RR42_RS01695 0.44 -0.9 385,704 - RR42_RS01695 0.44 -0.9 385,704 - RR42_RS01695 0.44 -1.6 385,704 - RR42_RS01695 0.44 -1.7 385,759 - RR42_RS01695 0.49 -1.2 385,759 - RR42_RS01695 0.49 -2.7 385,759 - RR42_RS01695 0.49 -1.0 385,806 + RR42_RS01695 0.52 -2.1 385,806 + RR42_RS01695 0.52 -1.7 385,845 - RR42_RS01695 0.55 -0.5 385,890 + RR42_RS01695 0.59 -1.6 385,891 - RR42_RS01695 0.59 -1.3 385,891 - RR42_RS01695 0.59 -2.5 385,990 - RR42_RS01695 0.66 -1.4 386,049 + RR42_RS01695 0.71 -1.7 386,049 + RR42_RS01695 0.71 +0.9 386,049 + RR42_RS01695 0.71 -2.2 386,049 + RR42_RS01695 0.71 -2.1 386,050 - RR42_RS01695 0.71 +0.8 386,050 - RR42_RS01695 0.71 -1.1 386,050 - RR42_RS01695 0.71 -1.1 386,050 - RR42_RS01695 0.71 -0.9 386,050 - RR42_RS01695 0.71 -1.1 386,050 - RR42_RS01695 0.71 +0.1 386,216 + RR42_RS01695 0.84 -1.4 386,477 + +0.8 386,749 + RR42_RS01700 0.12 +0.6 386,845 + RR42_RS01700 0.17 +1.5 386,887 + RR42_RS01700 0.19 +0.6 386,887 + RR42_RS01700 0.19 +1.2 386,887 + RR42_RS01700 0.19 +1.0 386,888 - RR42_RS01700 0.19 -1.6 386,888 - RR42_RS01700 0.19 -0.2 386,888 - RR42_RS01700 0.19 -0.8 386,888 - RR42_RS01700 0.19 -0.7 386,888 - RR42_RS01700 0.19 -2.4 386,977 + RR42_RS01700 0.24 +1.1 386,978 - RR42_RS01700 0.24 -2.9 387,030 + RR42_RS01700 0.26 +0.4 387,050 - RR42_RS01700 0.27 +0.2 387,052 + RR42_RS01700 0.27 +1.0 387,052 + RR42_RS01700 0.27 +0.8 387,053 - RR42_RS01700 0.27 -1.0
Or see this region's nucleotide sequence