Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5096

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5094 and PfGW456L13_5095 are separated by 199 nucleotidesPfGW456L13_5095 and PfGW456L13_5096 are separated by 105 nucleotidesPfGW456L13_5096 and PfGW456L13_5097 are separated by 9 nucleotidesPfGW456L13_5097 and PfGW456L13_5098 are separated by 28 nucleotidesPfGW456L13_5098 and PfGW456L13_5099 are separated by 17 nucleotides PfGW456L13_5094 - Cell division protein FtsH (EC 3.4.24.-), at 5,683,714 to 5,685,624 _5094 PfGW456L13_5095 - Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-), at 5,685,824 to 5,686,456 _5095 PfGW456L13_5096 - FIG004454: RNA binding protein, at 5,686,562 to 5,686,870 _5096 PfGW456L13_5097 - hypothetical protein, at 5,686,880 to 5,687,284 _5097 PfGW456L13_5098 - Transcription elongation factor GreA, at 5,687,313 to 5,687,774 _5098 PfGW456L13_5099 - Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), at 5,687,792 to 5,691,013 _5099 Position (kb) 5686 5687Strain fitness (log2 ratio) -2 -1 0 1 2at 5685.636 kb on - strandat 5685.636 kb on - strandat 5685.636 kb on - strandat 5685.636 kb on - strandat 5685.636 kb on - strandat 5685.636 kb on - strandat 5685.684 kb on - strandat 5685.701 kb on - strandat 5685.701 kb on - strandat 5685.701 kb on - strandat 5685.701 kb on - strandat 5685.701 kb on - strandat 5685.701 kb on - strandat 5685.701 kb on - strandat 5685.701 kb on - strandat 5685.701 kb on - strandat 5685.701 kb on - strandat 5685.701 kb on - strandat 5685.701 kb on - strandat 5685.701 kb on - strandat 5685.701 kb on - strandat 5685.701 kb on - strandat 5685.704 kb on - strandat 5685.704 kb on - strandat 5685.704 kb on - strandat 5685.704 kb on - strandat 5685.704 kb on - strandat 5685.704 kb on - strandat 5685.704 kb on - strandat 5685.704 kb on - strandat 5685.704 kb on - strandat 5685.709 kb on - strandat 5685.709 kb on - strandat 5685.709 kb on - strandat 5685.709 kb on - strandat 5685.709 kb on - strandat 5685.709 kb on - strandat 5685.713 kb on - strandat 5685.713 kb on - strandat 5685.713 kb on - strandat 5685.765 kb on - strandat 5685.765 kb on - strandat 5685.765 kb on - strandat 5685.788 kb on - strandat 5685.788 kb on - strandat 5686.536 kb on - strandat 5686.536 kb on - strandat 5686.562 kb on - strandat 5686.593 kb on - strand, within PfGW456L13_5096at 5686.593 kb on - strand, within PfGW456L13_5096at 5686.627 kb on - strand, within PfGW456L13_5096at 5686.627 kb on - strand, within PfGW456L13_5096at 5686.627 kb on - strand, within PfGW456L13_5096at 5686.948 kb on + strand, within PfGW456L13_5097at 5686.948 kb on + strand, within PfGW456L13_5097at 5686.949 kb on - strand, within PfGW456L13_5097at 5686.966 kb on - strand, within PfGW456L13_5097at 5686.966 kb on - strand, within PfGW456L13_5097at 5686.966 kb on - strand, within PfGW456L13_5097at 5686.966 kb on - strand, within PfGW456L13_5097at 5686.966 kb on - strand, within PfGW456L13_5097at 5687.019 kb on + strand, within PfGW456L13_5097at 5687.019 kb on + strand, within PfGW456L13_5097at 5687.019 kb on + strand, within PfGW456L13_5097at 5687.019 kb on + strand, within PfGW456L13_5097at 5687.019 kb on + strand, within PfGW456L13_5097at 5687.020 kb on - strand, within PfGW456L13_5097at 5687.034 kb on + strand, within PfGW456L13_5097at 5687.034 kb on + strand, within PfGW456L13_5097at 5687.034 kb on + strand, within PfGW456L13_5097at 5687.035 kb on - strand, within PfGW456L13_5097at 5687.035 kb on - strand, within PfGW456L13_5097at 5687.035 kb on - strand, within PfGW456L13_5097at 5687.035 kb on - strand, within PfGW456L13_5097at 5687.035 kb on - strand, within PfGW456L13_5097at 5687.035 kb on - strand, within PfGW456L13_5097at 5687.075 kb on + strand, within PfGW456L13_5097at 5687.076 kb on - strand, within PfGW456L13_5097at 5687.120 kb on + strand, within PfGW456L13_5097at 5687.121 kb on - strand, within PfGW456L13_5097at 5687.147 kb on + strand, within PfGW456L13_5097at 5687.814 kb on - strandat 5687.814 kb on - strandat 5687.814 kb on - strandat 5687.814 kb on - strandat 5687.832 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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5,685,636 - -0.8
5,685,636 - -0.2
5,685,636 - -1.4
5,685,636 - +0.3
5,685,636 - +0.2
5,685,636 - -1.4
5,685,684 - -0.7
5,685,701 - +0.3
5,685,701 - -0.8
5,685,701 - -0.6
5,685,701 - -0.1
5,685,701 - +1.0
5,685,701 - -1.6
5,685,701 - -0.9
5,685,701 - -1.5
5,685,701 - +0.4
5,685,701 - +0.4
5,685,701 - +1.9
5,685,701 - -0.3
5,685,701 - +0.7
5,685,701 - +0.1
5,685,701 - +1.7
5,685,704 - -0.9
5,685,704 - -0.4
5,685,704 - +0.5
5,685,704 - -0.8
5,685,704 - -0.2
5,685,704 - +0.6
5,685,704 - -1.1
5,685,704 - +0.3
5,685,704 - -0.7
5,685,709 - +0.6
5,685,709 - +0.3
5,685,709 - -0.0
5,685,709 - -0.1
5,685,709 - -0.9
5,685,709 - +0.5
5,685,713 - +0.6
5,685,713 - -1.6
5,685,713 - -0.3
5,685,765 - +0.2
5,685,765 - -1.3
5,685,765 - +0.5
5,685,788 - -0.1
5,685,788 - -0.7
5,686,536 - +0.4
5,686,536 - +0.5
5,686,562 - -0.7
5,686,593 - PfGW456L13_5096 0.10 +1.3
5,686,593 - PfGW456L13_5096 0.10 +1.1
5,686,627 - PfGW456L13_5096 0.21 -2.1
5,686,627 - PfGW456L13_5096 0.21 -0.2
5,686,627 - PfGW456L13_5096 0.21 +1.1
5,686,948 + PfGW456L13_5097 0.17 -0.2
5,686,948 + PfGW456L13_5097 0.17 +0.1
5,686,949 - PfGW456L13_5097 0.17 +0.1
5,686,966 - PfGW456L13_5097 0.21 -0.2
5,686,966 - PfGW456L13_5097 0.21 -0.3
5,686,966 - PfGW456L13_5097 0.21 +0.7
5,686,966 - PfGW456L13_5097 0.21 -0.0
5,686,966 - PfGW456L13_5097 0.21 -0.9
5,687,019 + PfGW456L13_5097 0.34 +0.1
5,687,019 + PfGW456L13_5097 0.34 +0.3
5,687,019 + PfGW456L13_5097 0.34 -0.7
5,687,019 + PfGW456L13_5097 0.34 +1.4
5,687,019 + PfGW456L13_5097 0.34 -1.5
5,687,020 - PfGW456L13_5097 0.35 +0.2
5,687,034 + PfGW456L13_5097 0.38 +1.4
5,687,034 + PfGW456L13_5097 0.38 -0.2
5,687,034 + PfGW456L13_5097 0.38 -0.7
5,687,035 - PfGW456L13_5097 0.38 -0.2
5,687,035 - PfGW456L13_5097 0.38 +0.5
5,687,035 - PfGW456L13_5097 0.38 -0.3
5,687,035 - PfGW456L13_5097 0.38 +0.5
5,687,035 - PfGW456L13_5097 0.38 +0.3
5,687,035 - PfGW456L13_5097 0.38 -0.9
5,687,075 + PfGW456L13_5097 0.48 -1.5
5,687,076 - PfGW456L13_5097 0.48 -0.1
5,687,120 + PfGW456L13_5097 0.59 +0.4
5,687,121 - PfGW456L13_5097 0.60 +0.3
5,687,147 + PfGW456L13_5097 0.66 +0.7
5,687,814 - -0.1
5,687,814 - +0.3
5,687,814 - -1.0
5,687,814 - -0.2
5,687,832 - +0.1

Or see this region's nucleotide sequence