Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2946

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2945 and PfGW456L13_2946 are separated by 789 nucleotidesPfGW456L13_2946 and PfGW456L13_2947 are separated by 153 nucleotidesPfGW456L13_2947 and PfGW456L13_2948 are separated by 165 nucleotides PfGW456L13_2945 - Outer membrane autotransporter barrel, at 3,284,738 to 3,286,945 _2945 PfGW456L13_2946 - Aspartate aminotransferase (EC 2.6.1.1), at 3,287,735 to 3,287,956 _2946 PfGW456L13_2947 - Aspartate aminotransferase (EC 2.6.1.1), at 3,288,110 to 3,288,484 _2947 PfGW456L13_2948 - 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43), at 3,288,650 to 3,289,627 _2948 Position (kb) 3287 3288Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3286.736 kb on + strandat 3286.737 kb on - strandat 3286.737 kb on - strandat 3286.737 kb on - strandat 3286.740 kb on + strandat 3286.741 kb on - strandat 3286.880 kb on + strandat 3286.934 kb on + strandat 3286.934 kb on + strandat 3286.935 kb on - strandat 3286.936 kb on + strandat 3286.936 kb on + strandat 3286.936 kb on + strandat 3286.936 kb on + strandat 3286.937 kb on - strandat 3286.937 kb on - strandat 3286.937 kb on - strandat 3286.977 kb on + strandat 3287.010 kb on + strandat 3287.115 kb on + strandat 3287.115 kb on + strandat 3287.115 kb on + strandat 3287.116 kb on - strandat 3287.116 kb on - strandat 3287.116 kb on - strandat 3287.116 kb on - strandat 3287.116 kb on - strandat 3287.116 kb on - strandat 3287.116 kb on - strandat 3287.116 kb on - strandat 3287.125 kb on + strandat 3287.125 kb on + strandat 3287.125 kb on + strandat 3287.125 kb on + strandat 3287.125 kb on + strandat 3287.125 kb on + strandat 3287.126 kb on - strandat 3287.126 kb on - strandat 3287.126 kb on - strandat 3287.126 kb on - strandat 3287.126 kb on - strandat 3287.126 kb on - strandat 3287.126 kb on - strandat 3287.126 kb on - strandat 3287.126 kb on - strandat 3287.127 kb on + strandat 3287.127 kb on + strandat 3287.127 kb on + strandat 3287.128 kb on - strandat 3287.128 kb on - strandat 3287.157 kb on + strandat 3287.160 kb on + strandat 3287.160 kb on + strandat 3287.190 kb on + strandat 3287.190 kb on + strandat 3287.209 kb on + strandat 3287.209 kb on + strandat 3287.209 kb on + strandat 3287.209 kb on + strandat 3287.209 kb on + strandat 3287.246 kb on + strandat 3287.246 kb on + strandat 3287.267 kb on + strandat 3287.267 kb on + strandat 3287.268 kb on - strandat 3287.297 kb on + strandat 3287.310 kb on + strandat 3287.311 kb on - strandat 3287.311 kb on - strandat 3287.318 kb on - strandat 3287.340 kb on + strandat 3287.341 kb on - strandat 3287.359 kb on + strandat 3287.359 kb on + strandat 3287.360 kb on - strandat 3287.360 kb on - strandat 3287.457 kb on - strandat 3287.470 kb on + strandat 3287.470 kb on + strandat 3287.470 kb on + strandat 3287.470 kb on + strandat 3287.471 kb on - strandat 3287.471 kb on - strandat 3287.471 kb on - strandat 3287.471 kb on - strandat 3287.538 kb on + strandat 3287.538 kb on + strandat 3287.538 kb on + strandat 3287.538 kb on + strandat 3287.538 kb on + strandat 3287.539 kb on - strandat 3287.539 kb on - strandat 3287.580 kb on + strandat 3287.580 kb on + strandat 3287.581 kb on - strandat 3287.594 kb on + strandat 3287.594 kb on + strandat 3287.594 kb on + strandat 3287.594 kb on + strandat 3287.594 kb on + strandat 3287.595 kb on - strandat 3287.595 kb on - strandat 3287.595 kb on - strandat 3287.595 kb on - strandat 3287.595 kb on - strandat 3287.595 kb on - strandat 3287.660 kb on + strandat 3287.660 kb on + strandat 3287.660 kb on + strandat 3287.661 kb on - strandat 3287.726 kb on + strandat 3287.727 kb on - strandat 3287.727 kb on - strandat 3287.731 kb on - strandat 3287.857 kb on + strand, within PfGW456L13_2946at 3287.857 kb on + strand, within PfGW456L13_2946at 3287.858 kb on - strand, within PfGW456L13_2946at 3287.858 kb on - strand, within PfGW456L13_2946at 3287.858 kb on - strand, within PfGW456L13_2946at 3287.976 kb on + strandat 3287.976 kb on + strandat 3287.976 kb on + strandat 3288.006 kb on + strandat 3288.006 kb on + strandat 3288.006 kb on + strandat 3288.006 kb on + strandat 3288.006 kb on + strandat 3288.006 kb on + strandat 3288.006 kb on + strandat 3288.007 kb on - strandat 3288.007 kb on - strandat 3288.007 kb on - strandat 3288.007 kb on - strandat 3288.007 kb on - strandat 3288.007 kb on - strandat 3288.007 kb on - strandat 3288.007 kb on - strandat 3288.008 kb on + strandat 3288.008 kb on + strandat 3288.008 kb on + strandat 3288.008 kb on + strandat 3288.008 kb on + strandat 3288.009 kb on - strandat 3288.009 kb on - strandat 3288.054 kb on - strandat 3288.131 kb on + strandat 3288.131 kb on + strandat 3288.131 kb on + strandat 3288.132 kb on - strandat 3288.132 kb on - strandat 3288.132 kb on - strandat 3288.132 kb on - strandat 3288.132 kb on - strandat 3288.132 kb on - strandat 3288.132 kb on - strandat 3288.132 kb on - strandat 3288.132 kb on - strandat 3288.132 kb on - strandat 3288.132 kb on - strandat 3288.133 kb on + strandat 3288.133 kb on + strandat 3288.203 kb on + strand, within PfGW456L13_2947at 3288.203 kb on + strand, within PfGW456L13_2947at 3288.203 kb on + strand, within PfGW456L13_2947at 3288.203 kb on + strand, within PfGW456L13_2947at 3288.203 kb on + strand, within PfGW456L13_2947at 3288.203 kb on + strand, within PfGW456L13_2947at 3288.331 kb on + strand, within PfGW456L13_2947at 3288.331 kb on + strand, within PfGW456L13_2947at 3288.331 kb on + strand, within PfGW456L13_2947at 3288.331 kb on + strand, within PfGW456L13_2947at 3288.332 kb on - strand, within PfGW456L13_2947at 3288.399 kb on + strand, within PfGW456L13_2947at 3288.400 kb on - strand, within PfGW456L13_2947at 3288.404 kb on + strand, within PfGW456L13_2947at 3288.405 kb on - strand, within PfGW456L13_2947at 3288.458 kb on + strandat 3288.458 kb on + strandat 3288.500 kb on + strandat 3288.500 kb on + strandat 3288.501 kb on - strandat 3288.597 kb on + strandat 3288.598 kb on - strandat 3288.626 kb on - strandat 3288.626 kb on - strandat 3288.626 kb on - strandat 3288.629 kb on + strandat 3288.629 kb on + strandat 3288.629 kb on + strandat 3288.629 kb on + strandat 3288.629 kb on + strandat 3288.629 kb on + strandat 3288.630 kb on - strandat 3288.630 kb on - strandat 3288.630 kb on - strandat 3288.630 kb on - strandat 3288.633 kb on + strandat 3288.633 kb on + strandat 3288.633 kb on + strandat 3288.633 kb on + strandat 3288.668 kb on + strandat 3288.668 kb on + strandat 3288.668 kb on + strandat 3288.668 kb on + strandat 3288.669 kb on - strandat 3288.669 kb on - strandat 3288.669 kb on - strandat 3288.669 kb on - strandat 3288.669 kb on - strandat 3288.669 kb on - strandat 3288.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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3,286,736 + -0.3
3,286,737 - +1.0
3,286,737 - +0.2
3,286,737 - -1.5
3,286,740 + +0.2
3,286,741 - -0.1
3,286,880 + -0.4
3,286,934 + +0.8
3,286,934 + -0.3
3,286,935 - +1.3
3,286,936 + +0.0
3,286,936 + -0.5
3,286,936 + -1.0
3,286,936 + -1.2
3,286,937 - +0.3
3,286,937 - +0.5
3,286,937 - +0.3
3,286,977 + +1.0
3,287,010 + +0.4
3,287,115 + +0.7
3,287,115 + +0.5
3,287,115 + -0.8
3,287,116 - +0.3
3,287,116 - +0.3
3,287,116 - -0.7
3,287,116 - -1.0
3,287,116 - +0.8
3,287,116 - -0.4
3,287,116 - -0.9
3,287,116 - -2.5
3,287,125 + -0.3
3,287,125 + -1.7
3,287,125 + +0.3
3,287,125 + -0.3
3,287,125 + +0.9
3,287,125 + +0.8
3,287,126 - +0.5
3,287,126 - -0.3
3,287,126 - +0.5
3,287,126 - -0.2
3,287,126 - -0.1
3,287,126 - +0.5
3,287,126 - +2.0
3,287,126 - -2.1
3,287,126 - -0.1
3,287,127 + -0.4
3,287,127 + +0.2
3,287,127 + +0.3
3,287,128 - -0.2
3,287,128 - -0.2
3,287,157 + -0.1
3,287,160 + -0.2
3,287,160 + -0.1
3,287,190 + -0.3
3,287,190 + +0.5
3,287,209 + +0.1
3,287,209 + +0.2
3,287,209 + +0.0
3,287,209 + +0.6
3,287,209 + +0.5
3,287,246 + +0.6
3,287,246 + +0.5
3,287,267 + -1.2
3,287,267 + +1.1
3,287,268 - +1.2
3,287,297 + +1.2
3,287,310 + +0.3
3,287,311 - -2.4
3,287,311 - +0.0
3,287,318 - -0.1
3,287,340 + +0.3
3,287,341 - -0.4
3,287,359 + -1.4
3,287,359 + -1.2
3,287,360 - +0.3
3,287,360 - +0.3
3,287,457 - +0.3
3,287,470 + +0.2
3,287,470 + +0.6
3,287,470 + +0.7
3,287,470 + -0.1
3,287,471 - -0.9
3,287,471 - -2.1
3,287,471 - -0.4
3,287,471 - -0.4
3,287,538 + -0.9
3,287,538 + -0.5
3,287,538 + -0.3
3,287,538 + -0.3
3,287,538 + +0.2
3,287,539 - +0.1
3,287,539 - +0.3
3,287,580 + +0.1
3,287,580 + +0.0
3,287,581 - -0.5
3,287,594 + +1.2
3,287,594 + +0.6
3,287,594 + +0.1
3,287,594 + -0.3
3,287,594 + -0.5
3,287,595 - -1.5
3,287,595 - +1.1
3,287,595 - +0.5
3,287,595 - +0.3
3,287,595 - +0.2
3,287,595 - +1.3
3,287,660 + +0.4
3,287,660 + -1.1
3,287,660 + +0.8
3,287,661 - -0.2
3,287,726 + -0.2
3,287,727 - -2.3
3,287,727 - +0.4
3,287,731 - +0.1
3,287,857 + PfGW456L13_2946 0.55 +1.7
3,287,857 + PfGW456L13_2946 0.55 +0.2
3,287,858 - PfGW456L13_2946 0.55 +0.6
3,287,858 - PfGW456L13_2946 0.55 +1.8
3,287,858 - PfGW456L13_2946 0.55 -0.9
3,287,976 + -0.8
3,287,976 + +0.7
3,287,976 + -0.2
3,288,006 + +0.3
3,288,006 + -1.9
3,288,006 + -0.4
3,288,006 + -0.1
3,288,006 + +1.0
3,288,006 + +0.2
3,288,006 + -0.3
3,288,007 - +1.2
3,288,007 - -0.0
3,288,007 - -0.9
3,288,007 - +0.2
3,288,007 - -0.1
3,288,007 - -1.4
3,288,007 - +0.1
3,288,007 - +0.3
3,288,008 + -0.5
3,288,008 + -0.1
3,288,008 + -0.2
3,288,008 + +1.2
3,288,008 + +1.3
3,288,009 - -0.8
3,288,009 - -1.1
3,288,054 - -0.6
3,288,131 + +0.1
3,288,131 + +0.2
3,288,131 + +0.0
3,288,132 - +0.4
3,288,132 - -0.8
3,288,132 - +1.2
3,288,132 - -0.4
3,288,132 - +0.1
3,288,132 - -0.6
3,288,132 - -0.2
3,288,132 - +0.4
3,288,132 - -0.6
3,288,132 - +0.8
3,288,132 - -2.1
3,288,133 + +1.1
3,288,133 + -0.4
3,288,203 + PfGW456L13_2947 0.25 -1.1
3,288,203 + PfGW456L13_2947 0.25 -0.1
3,288,203 + PfGW456L13_2947 0.25 -1.1
3,288,203 + PfGW456L13_2947 0.25 -1.0
3,288,203 + PfGW456L13_2947 0.25 +1.1
3,288,203 + PfGW456L13_2947 0.25 -0.6
3,288,331 + PfGW456L13_2947 0.59 +0.4
3,288,331 + PfGW456L13_2947 0.59 -0.2
3,288,331 + PfGW456L13_2947 0.59 -0.4
3,288,331 + PfGW456L13_2947 0.59 -1.1
3,288,332 - PfGW456L13_2947 0.59 -0.0
3,288,399 + PfGW456L13_2947 0.77 -0.6
3,288,400 - PfGW456L13_2947 0.77 -1.0
3,288,404 + PfGW456L13_2947 0.78 -1.0
3,288,405 - PfGW456L13_2947 0.79 -0.6
3,288,458 + +0.0
3,288,458 + +0.4
3,288,500 + +0.6
3,288,500 + +0.1
3,288,501 - +0.4
3,288,597 + +0.2
3,288,598 - -1.3
3,288,626 - -0.2
3,288,626 - -0.4
3,288,626 - -2.9
3,288,629 + +0.2
3,288,629 + +0.8
3,288,629 + -1.7
3,288,629 + -1.1
3,288,629 + +0.5
3,288,629 + +0.6
3,288,630 - +0.1
3,288,630 - +0.1
3,288,630 - +0.0
3,288,630 - +0.0
3,288,633 + +0.9
3,288,633 + +0.9
3,288,633 + -1.4
3,288,633 + -0.2
3,288,668 + +0.7
3,288,668 + +0.3
3,288,668 + -0.0
3,288,668 + -0.1
3,288,669 - -0.6
3,288,669 - +1.2
3,288,669 - +1.2
3,288,669 - +0.7
3,288,669 - -0.6
3,288,669 - +0.6
3,288,669 - -0.2

Or see this region's nucleotide sequence