Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2380

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2379 and PfGW456L13_2380 are separated by 504 nucleotidesPfGW456L13_2380 and PfGW456L13_2381 are separated by 525 nucleotides PfGW456L13_2379 - hypothetical protein, at 2,635,264 to 2,635,623 _2379 PfGW456L13_2380 - Lactoylglutathione lyase (EC 4.4.1.5), at 2,636,128 to 2,636,535 _2380 PfGW456L13_2381 - hypothetical protein, at 2,637,061 to 2,637,513 _2381 Position (kb) 2636 2637Strain fitness (log2 ratio) -1 0 1 2 3at 2635.265 kb on + strandat 2635.265 kb on + strandat 2635.265 kb on + strandat 2635.266 kb on - strandat 2635.266 kb on - strandat 2635.266 kb on - strandat 2635.266 kb on - strandat 2635.266 kb on - strandat 2635.575 kb on - strand, within PfGW456L13_2379at 2635.628 kb on - strandat 2635.628 kb on - strandat 2635.631 kb on + strandat 2635.631 kb on + strandat 2635.632 kb on - strandat 2635.632 kb on - strandat 2635.632 kb on - strandat 2635.637 kb on + strandat 2635.638 kb on - strandat 2635.638 kb on - strandat 2635.638 kb on - strandat 2635.638 kb on - strandat 2635.642 kb on + strandat 2635.665 kb on - strandat 2635.695 kb on - strandat 2635.695 kb on - strandat 2635.695 kb on - strandat 2635.695 kb on - strandat 2635.695 kb on - strandat 2635.697 kb on + strandat 2635.698 kb on - strandat 2635.698 kb on - strandat 2635.783 kb on - strandat 2635.783 kb on - strandat 2635.814 kb on + strandat 2635.817 kb on + strandat 2635.817 kb on + strandat 2635.817 kb on + strandat 2635.817 kb on + strandat 2635.818 kb on - strandat 2635.897 kb on + strandat 2635.903 kb on + strandat 2635.939 kb on + strandat 2635.939 kb on + strandat 2635.939 kb on + strandat 2635.940 kb on - strandat 2636.025 kb on + strandat 2636.025 kb on + strandat 2636.152 kb on + strandat 2636.152 kb on + strandat 2636.153 kb on - strandat 2636.153 kb on - strandat 2636.165 kb on + strandat 2636.165 kb on + strandat 2636.165 kb on + strandat 2636.165 kb on + strandat 2636.165 kb on + strandat 2636.165 kb on + strandat 2636.166 kb on - strandat 2636.166 kb on - strandat 2636.166 kb on - strandat 2636.166 kb on - strandat 2636.166 kb on - strandat 2636.236 kb on + strand, within PfGW456L13_2380at 2636.237 kb on - strand, within PfGW456L13_2380at 2636.366 kb on + strand, within PfGW456L13_2380at 2636.464 kb on + strand, within PfGW456L13_2380at 2636.510 kb on + strandat 2636.935 kb on + strandat 2636.935 kb on + strandat 2636.935 kb on + strandat 2636.935 kb on + strandat 2636.936 kb on - strandat 2636.945 kb on + strandat 2636.973 kb on + strandat 2636.974 kb on - strandat 2637.020 kb on + strandat 2637.020 kb on + strandat 2637.021 kb on - strandat 2637.021 kb on - strandat 2637.021 kb on - strandat 2637.098 kb on + strandat 2637.098 kb on + strandat 2637.099 kb on - strandat 2637.173 kb on - strand, within PfGW456L13_2381at 2637.173 kb on - strand, within PfGW456L13_2381at 2637.207 kb on + strand, within PfGW456L13_2381at 2637.207 kb on + strand, within PfGW456L13_2381at 2637.207 kb on + strand, within PfGW456L13_2381at 2637.208 kb on - strand, within PfGW456L13_2381at 2637.208 kb on - strand, within PfGW456L13_2381at 2637.427 kb on + strand, within PfGW456L13_2381at 2637.427 kb on + strand, within PfGW456L13_2381at 2637.428 kb on - strand, within PfGW456L13_2381

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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2,635,265 + -0.1
2,635,265 + -0.7
2,635,265 + -0.3
2,635,266 - -0.6
2,635,266 - -1.2
2,635,266 - -0.3
2,635,266 - -0.1
2,635,266 - -0.4
2,635,575 - PfGW456L13_2379 0.86 -1.6
2,635,628 - +0.7
2,635,628 - -0.7
2,635,631 + +0.3
2,635,631 + -0.9
2,635,632 - +0.6
2,635,632 - -0.6
2,635,632 - +0.9
2,635,637 + -0.5
2,635,638 - +0.1
2,635,638 - +0.0
2,635,638 - +0.4
2,635,638 - +0.8
2,635,642 + +0.9
2,635,665 - +1.4
2,635,695 - +0.3
2,635,695 - +0.8
2,635,695 - -0.6
2,635,695 - -0.3
2,635,695 - +0.5
2,635,697 + +0.5
2,635,698 - +0.3
2,635,698 - +0.5
2,635,783 - +0.2
2,635,783 - +0.2
2,635,814 + +1.0
2,635,817 + +0.1
2,635,817 + -0.7
2,635,817 + -0.3
2,635,817 + +0.2
2,635,818 - +0.0
2,635,897 + +0.9
2,635,903 + -0.3
2,635,939 + -0.3
2,635,939 + +0.4
2,635,939 + +0.4
2,635,940 - -0.1
2,636,025 + -0.2
2,636,025 + -0.1
2,636,152 + -0.5
2,636,152 + -0.5
2,636,153 - +0.6
2,636,153 - -0.8
2,636,165 + +0.7
2,636,165 + -0.3
2,636,165 + -0.1
2,636,165 + +0.5
2,636,165 + +0.1
2,636,165 + +0.0
2,636,166 - +0.3
2,636,166 - +0.6
2,636,166 - +2.1
2,636,166 - +0.1
2,636,166 - +0.6
2,636,236 + PfGW456L13_2380 0.26 +0.6
2,636,237 - PfGW456L13_2380 0.27 +0.7
2,636,366 + PfGW456L13_2380 0.58 -0.0
2,636,464 + PfGW456L13_2380 0.82 +0.3
2,636,510 + -0.2
2,636,935 + -0.1
2,636,935 + +2.0
2,636,935 + -0.2
2,636,935 + +0.2
2,636,936 - -0.6
2,636,945 + -0.4
2,636,973 + +1.0
2,636,974 - +0.9
2,637,020 + +0.7
2,637,020 + +0.3
2,637,021 - -0.6
2,637,021 - -0.3
2,637,021 - +0.2
2,637,098 + -0.1
2,637,098 + +3.0
2,637,099 - -0.2
2,637,173 - PfGW456L13_2381 0.25 -0.1
2,637,173 - PfGW456L13_2381 0.25 +0.7
2,637,207 + PfGW456L13_2381 0.32 +0.5
2,637,207 + PfGW456L13_2381 0.32 +0.9
2,637,207 + PfGW456L13_2381 0.32 -0.0
2,637,208 - PfGW456L13_2381 0.32 -0.6
2,637,208 - PfGW456L13_2381 0.32 -0.1
2,637,427 + PfGW456L13_2381 0.81 -0.4
2,637,427 + PfGW456L13_2381 0.81 -0.6
2,637,428 - PfGW456L13_2381 0.81 -0.5

Or see this region's nucleotide sequence