Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1757

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1755 and PfGW456L13_1756 overlap by 4 nucleotidesPfGW456L13_1756 and PfGW456L13_1757 overlap by 14 nucleotidesPfGW456L13_1757 and PfGW456L13_1758 overlap by 4 nucleotidesPfGW456L13_1758 and PfGW456L13_1759 are separated by 253 nucleotides PfGW456L13_1755 - Electron transport complex protein RnfG, at 1,930,895 to 1,931,506 _1755 PfGW456L13_1756 - Electron transport complex protein RnfD, at 1,931,503 to 1,932,489 _1756 PfGW456L13_1757 - Electron transport complex protein RnfB, at 1,932,476 to 1,933,489 _1757 PfGW456L13_1758 - Electron transport complex protein RnfA, at 1,933,486 to 1,934,055 _1758 PfGW456L13_1759 - Methionyl-tRNA synthetase (EC 6.1.1.10), at 1,934,309 to 1,936,360 _1759 Position (kb) 1932 1933 1934Strain fitness (log2 ratio) -2 -1 0 1at 1931.613 kb on + strand, within PfGW456L13_1756at 1931.614 kb on - strand, within PfGW456L13_1756at 1931.614 kb on - strand, within PfGW456L13_1756at 1931.614 kb on - strand, within PfGW456L13_1756at 1931.624 kb on + strand, within PfGW456L13_1756at 1931.624 kb on + strand, within PfGW456L13_1756at 1931.624 kb on + strand, within PfGW456L13_1756at 1931.625 kb on - strand, within PfGW456L13_1756at 1931.625 kb on - strand, within PfGW456L13_1756at 1932.115 kb on + strand, within PfGW456L13_1756at 1932.116 kb on - strand, within PfGW456L13_1756at 1932.116 kb on - strand, within PfGW456L13_1756at 1932.116 kb on - strand, within PfGW456L13_1756at 1932.170 kb on + strand, within PfGW456L13_1756at 1932.170 kb on + strand, within PfGW456L13_1756at 1932.170 kb on + strand, within PfGW456L13_1756at 1932.170 kb on + strand, within PfGW456L13_1756at 1932.170 kb on + strand, within PfGW456L13_1756at 1932.170 kb on + strand, within PfGW456L13_1756at 1932.170 kb on + strand, within PfGW456L13_1756at 1932.170 kb on + strand, within PfGW456L13_1756at 1932.170 kb on + strand, within PfGW456L13_1756at 1932.170 kb on + strand, within PfGW456L13_1756at 1932.170 kb on + strand, within PfGW456L13_1756at 1932.170 kb on + strand, within PfGW456L13_1756at 1932.170 kb on + strand, within PfGW456L13_1756at 1932.170 kb on + strand, within PfGW456L13_1756at 1932.170 kb on + strand, within PfGW456L13_1756at 1932.171 kb on - strand, within PfGW456L13_1756at 1932.171 kb on - strand, within PfGW456L13_1756at 1932.171 kb on - strand, within PfGW456L13_1756at 1932.171 kb on - strand, within PfGW456L13_1756at 1932.171 kb on - strand, within PfGW456L13_1756at 1932.171 kb on - strand, within PfGW456L13_1756at 1932.171 kb on - strand, within PfGW456L13_1756at 1932.234 kb on - strand, within PfGW456L13_1756at 1932.280 kb on - strand, within PfGW456L13_1756at 1932.392 kb on + strandat 1933.082 kb on + strand, within PfGW456L13_1757at 1933.082 kb on + strand, within PfGW456L13_1757at 1933.083 kb on - strand, within PfGW456L13_1757at 1933.264 kb on + strand, within PfGW456L13_1757at 1933.266 kb on + strand, within PfGW456L13_1757at 1933.266 kb on + strand, within PfGW456L13_1757at 1933.266 kb on + strand, within PfGW456L13_1757at 1933.266 kb on + strand, within PfGW456L13_1757at 1933.267 kb on - strand, within PfGW456L13_1757at 1933.267 kb on - strand, within PfGW456L13_1757at 1933.267 kb on - strand, within PfGW456L13_1757at 1933.267 kb on - strand, within PfGW456L13_1757at 1933.267 kb on - strand, within PfGW456L13_1757at 1933.267 kb on - strand, within PfGW456L13_1757at 1933.720 kb on + strand, within PfGW456L13_1758at 1933.720 kb on + strand, within PfGW456L13_1758at 1933.720 kb on + strand, within PfGW456L13_1758at 1933.765 kb on + strand, within PfGW456L13_1758at 1933.766 kb on - strand, within PfGW456L13_1758at 1933.861 kb on + strand, within PfGW456L13_1758at 1933.861 kb on + strand, within PfGW456L13_1758at 1933.862 kb on - strand, within PfGW456L13_1758at 1933.862 kb on - strand, within PfGW456L13_1758at 1933.862 kb on - strand, within PfGW456L13_1758at 1933.862 kb on - strand, within PfGW456L13_1758at 1933.884 kb on - strand, within PfGW456L13_1758at 1933.884 kb on - strand, within PfGW456L13_1758at 1933.948 kb on + strand, within PfGW456L13_1758at 1933.948 kb on + strand, within PfGW456L13_1758at 1933.948 kb on + strand, within PfGW456L13_1758at 1933.948 kb on + strand, within PfGW456L13_1758at 1933.948 kb on + strand, within PfGW456L13_1758at 1933.948 kb on + strand, within PfGW456L13_1758at 1933.948 kb on + strand, within PfGW456L13_1758at 1933.948 kb on + strand, within PfGW456L13_1758at 1933.948 kb on + strand, within PfGW456L13_1758at 1933.948 kb on + strand, within PfGW456L13_1758at 1933.948 kb on + strand, within PfGW456L13_1758at 1933.949 kb on - strand, within PfGW456L13_1758at 1933.949 kb on - strand, within PfGW456L13_1758at 1933.949 kb on - strand, within PfGW456L13_1758at 1933.949 kb on - strand, within PfGW456L13_1758at 1933.949 kb on - strand, within PfGW456L13_1758at 1933.949 kb on - strand, within PfGW456L13_1758at 1934.037 kb on + strandat 1934.037 kb on + strandat 1934.037 kb on + strandat 1934.038 kb on - strandat 1934.077 kb on + strandat 1934.077 kb on + strandat 1934.078 kb on - strandat 1934.078 kb on - strandat 1934.086 kb on + strandat 1934.160 kb on - strandat 1934.160 kb on - strandat 1934.160 kb on - strandat 1934.160 kb on - strandat 1934.160 kb on - strandat 1934.194 kb on + strandat 1934.195 kb on - strandat 1934.195 kb on - strandat 1934.195 kb on - strandat 1934.195 kb on - strandat 1934.208 kb on + strandat 1934.208 kb on + strandat 1934.217 kb on + strandat 1934.218 kb on - strandat 1934.218 kb on - strandat 1934.225 kb on - strandat 1934.310 kb on + strandat 1934.310 kb on + strandat 1934.310 kb on + strandat 1934.310 kb on + strandat 1934.310 kb on + strandat 1934.311 kb on - strandat 1934.311 kb on - strandat 1934.311 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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1,931,613 + PfGW456L13_1756 0.11 +0.2
1,931,614 - PfGW456L13_1756 0.11 -0.6
1,931,614 - PfGW456L13_1756 0.11 +0.3
1,931,614 - PfGW456L13_1756 0.11 -0.8
1,931,624 + PfGW456L13_1756 0.12 -0.0
1,931,624 + PfGW456L13_1756 0.12 -0.7
1,931,624 + PfGW456L13_1756 0.12 -0.2
1,931,625 - PfGW456L13_1756 0.12 -0.5
1,931,625 - PfGW456L13_1756 0.12 +0.3
1,932,115 + PfGW456L13_1756 0.62 +0.2
1,932,116 - PfGW456L13_1756 0.62 -0.1
1,932,116 - PfGW456L13_1756 0.62 +0.0
1,932,116 - PfGW456L13_1756 0.62 -0.4
1,932,170 + PfGW456L13_1756 0.68 -0.4
1,932,170 + PfGW456L13_1756 0.68 +0.4
1,932,170 + PfGW456L13_1756 0.68 -0.9
1,932,170 + PfGW456L13_1756 0.68 +0.5
1,932,170 + PfGW456L13_1756 0.68 +0.2
1,932,170 + PfGW456L13_1756 0.68 -0.6
1,932,170 + PfGW456L13_1756 0.68 -0.0
1,932,170 + PfGW456L13_1756 0.68 +0.7
1,932,170 + PfGW456L13_1756 0.68 -0.2
1,932,170 + PfGW456L13_1756 0.68 -0.1
1,932,170 + PfGW456L13_1756 0.68 +1.6
1,932,170 + PfGW456L13_1756 0.68 +0.2
1,932,170 + PfGW456L13_1756 0.68 +0.9
1,932,170 + PfGW456L13_1756 0.68 -0.4
1,932,170 + PfGW456L13_1756 0.68 +0.5
1,932,171 - PfGW456L13_1756 0.68 +0.4
1,932,171 - PfGW456L13_1756 0.68 +1.0
1,932,171 - PfGW456L13_1756 0.68 -0.6
1,932,171 - PfGW456L13_1756 0.68 +1.3
1,932,171 - PfGW456L13_1756 0.68 -0.2
1,932,171 - PfGW456L13_1756 0.68 +0.2
1,932,171 - PfGW456L13_1756 0.68 -1.0
1,932,234 - PfGW456L13_1756 0.74 -0.9
1,932,280 - PfGW456L13_1756 0.79 -0.3
1,932,392 + +0.7
1,933,082 + PfGW456L13_1757 0.60 +0.1
1,933,082 + PfGW456L13_1757 0.60 +0.3
1,933,083 - PfGW456L13_1757 0.60 +0.9
1,933,264 + PfGW456L13_1757 0.78 +0.3
1,933,266 + PfGW456L13_1757 0.78 +0.3
1,933,266 + PfGW456L13_1757 0.78 +0.8
1,933,266 + PfGW456L13_1757 0.78 +1.0
1,933,266 + PfGW456L13_1757 0.78 +0.6
1,933,267 - PfGW456L13_1757 0.78 +0.7
1,933,267 - PfGW456L13_1757 0.78 -0.4
1,933,267 - PfGW456L13_1757 0.78 -0.2
1,933,267 - PfGW456L13_1757 0.78 -0.8
1,933,267 - PfGW456L13_1757 0.78 +1.0
1,933,267 - PfGW456L13_1757 0.78 +1.1
1,933,720 + PfGW456L13_1758 0.41 -0.5
1,933,720 + PfGW456L13_1758 0.41 +0.1
1,933,720 + PfGW456L13_1758 0.41 -0.2
1,933,765 + PfGW456L13_1758 0.49 -0.1
1,933,766 - PfGW456L13_1758 0.49 +1.6
1,933,861 + PfGW456L13_1758 0.66 -1.2
1,933,861 + PfGW456L13_1758 0.66 +0.8
1,933,862 - PfGW456L13_1758 0.66 +0.0
1,933,862 - PfGW456L13_1758 0.66 -0.2
1,933,862 - PfGW456L13_1758 0.66 -0.7
1,933,862 - PfGW456L13_1758 0.66 +0.1
1,933,884 - PfGW456L13_1758 0.70 -0.4
1,933,884 - PfGW456L13_1758 0.70 -1.0
1,933,948 + PfGW456L13_1758 0.81 +0.4
1,933,948 + PfGW456L13_1758 0.81 +0.3
1,933,948 + PfGW456L13_1758 0.81 +0.2
1,933,948 + PfGW456L13_1758 0.81 -0.1
1,933,948 + PfGW456L13_1758 0.81 -0.4
1,933,948 + PfGW456L13_1758 0.81 -0.2
1,933,948 + PfGW456L13_1758 0.81 -0.6
1,933,948 + PfGW456L13_1758 0.81 +0.0
1,933,948 + PfGW456L13_1758 0.81 +0.1
1,933,948 + PfGW456L13_1758 0.81 -0.1
1,933,948 + PfGW456L13_1758 0.81 +0.4
1,933,949 - PfGW456L13_1758 0.81 -0.7
1,933,949 - PfGW456L13_1758 0.81 +0.0
1,933,949 - PfGW456L13_1758 0.81 +0.3
1,933,949 - PfGW456L13_1758 0.81 +0.4
1,933,949 - PfGW456L13_1758 0.81 +0.2
1,933,949 - PfGW456L13_1758 0.81 -0.2
1,934,037 + +0.2
1,934,037 + -0.0
1,934,037 + +0.3
1,934,038 - +0.4
1,934,077 + +0.7
1,934,077 + -0.3
1,934,078 - +0.3
1,934,078 - -1.8
1,934,086 + +0.1
1,934,160 - -0.3
1,934,160 - -0.1
1,934,160 - +0.6
1,934,160 - +1.5
1,934,160 - +0.9
1,934,194 + -0.3
1,934,195 - -0.2
1,934,195 - +0.1
1,934,195 - +0.3
1,934,195 - +1.7
1,934,208 + +0.9
1,934,208 + -1.0
1,934,217 + -0.3
1,934,218 - -0.4
1,934,218 - -0.2
1,934,225 - +0.3
1,934,310 + +0.1
1,934,310 + -0.2
1,934,310 + -0.6
1,934,310 + +0.2
1,934,310 + +1.0
1,934,311 - -0.9
1,934,311 - +0.6
1,934,311 - +0.3

Or see this region's nucleotide sequence