Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1344

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1343 and PfGW456L13_1344 are separated by 157 nucleotidesPfGW456L13_1344 and PfGW456L13_1345 overlap by 4 nucleotidesPfGW456L13_1345 and PfGW456L13_1346 overlap by 8 nucleotides PfGW456L13_1343 - Nitrogen regulation protein NR(I), at 1,487,694 to 1,489,607 _1343 PfGW456L13_1344 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-), at 1,489,765 to 1,491,114 _1344 PfGW456L13_1345 - 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-), at 1,491,111 to 1,491,743 _1345 PfGW456L13_1346 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 1,491,736 to 1,492,020 _1346 Position (kb) 1489 1490 1491 1492Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1489.121 kb on + strand, within PfGW456L13_1343at 1489.121 kb on + strand, within PfGW456L13_1343at 1489.121 kb on + strand, within PfGW456L13_1343at 1489.121 kb on + strand, within PfGW456L13_1343at 1489.121 kb on + strand, within PfGW456L13_1343at 1489.121 kb on + strand, within PfGW456L13_1343at 1489.121 kb on + strand, within PfGW456L13_1343at 1489.121 kb on + strand, within PfGW456L13_1343at 1489.122 kb on - strand, within PfGW456L13_1343at 1489.122 kb on - strand, within PfGW456L13_1343at 1489.122 kb on - strand, within PfGW456L13_1343at 1489.122 kb on - strand, within PfGW456L13_1343at 1489.122 kb on - strand, within PfGW456L13_1343at 1489.122 kb on - strand, within PfGW456L13_1343at 1489.122 kb on - strand, within PfGW456L13_1343at 1489.122 kb on - strand, within PfGW456L13_1343at 1489.122 kb on - strand, within PfGW456L13_1343at 1489.122 kb on - strand, within PfGW456L13_1343at 1489.167 kb on + strand, within PfGW456L13_1343at 1489.167 kb on + strand, within PfGW456L13_1343at 1489.167 kb on + strand, within PfGW456L13_1343at 1489.168 kb on - strand, within PfGW456L13_1343at 1489.168 kb on - strand, within PfGW456L13_1343at 1489.168 kb on - strand, within PfGW456L13_1343at 1489.276 kb on + strand, within PfGW456L13_1343at 1489.276 kb on + strand, within PfGW456L13_1343at 1489.277 kb on - strand, within PfGW456L13_1343at 1489.307 kb on - strand, within PfGW456L13_1343at 1489.346 kb on + strand, within PfGW456L13_1343at 1489.346 kb on + strand, within PfGW456L13_1343at 1489.347 kb on - strand, within PfGW456L13_1343at 1489.358 kb on + strand, within PfGW456L13_1343at 1489.358 kb on + strand, within PfGW456L13_1343at 1489.358 kb on + strand, within PfGW456L13_1343at 1489.358 kb on + strand, within PfGW456L13_1343at 1489.358 kb on + strand, within PfGW456L13_1343at 1489.358 kb on + strand, within PfGW456L13_1343at 1489.359 kb on - strand, within PfGW456L13_1343at 1489.359 kb on - strand, within PfGW456L13_1343at 1489.359 kb on - strand, within PfGW456L13_1343at 1489.359 kb on - strand, within PfGW456L13_1343at 1489.359 kb on - strand, within PfGW456L13_1343at 1489.435 kb on + strandat 1489.436 kb on - strandat 1489.495 kb on + strandat 1489.526 kb on + strandat 1489.526 kb on + strandat 1489.526 kb on + strandat 1489.527 kb on - strandat 1489.527 kb on - strandat 1489.535 kb on + strandat 1489.565 kb on + strandat 1489.649 kb on + strandat 1489.649 kb on + strandat 1489.650 kb on - strandat 1489.729 kb on + strandat 1489.729 kb on + strandat 1489.734 kb on + strandat 1489.752 kb on + strandat 1489.752 kb on + strandat 1489.776 kb on + strandat 1489.776 kb on + strandat 1489.776 kb on + strandat 1489.776 kb on + strandat 1489.776 kb on + strandat 1489.776 kb on + strandat 1489.785 kb on + strandat 1489.785 kb on + strandat 1489.921 kb on + strand, within PfGW456L13_1344at 1489.921 kb on + strand, within PfGW456L13_1344at 1489.921 kb on + strand, within PfGW456L13_1344at 1490.002 kb on + strand, within PfGW456L13_1344at 1490.026 kb on + strand, within PfGW456L13_1344at 1490.743 kb on + strand, within PfGW456L13_1344at 1490.743 kb on + strand, within PfGW456L13_1344at 1490.743 kb on + strand, within PfGW456L13_1344at 1491.741 kb on + strandat 1491.741 kb on + strandat 1491.741 kb on + strandat 1491.742 kb on - strandat 1491.742 kb on - strandat 1491.742 kb on - strandat 1491.856 kb on + strand, within PfGW456L13_1346at 1491.856 kb on + strand, within PfGW456L13_1346at 1491.856 kb on + strand, within PfGW456L13_1346at 1491.856 kb on + strand, within PfGW456L13_1346at 1491.857 kb on - strand, within PfGW456L13_1346at 1491.857 kb on - strand, within PfGW456L13_1346at 1491.913 kb on + strand, within PfGW456L13_1346at 1491.986 kb on + strand, within PfGW456L13_1346at 1491.987 kb on - strand, within PfGW456L13_1346at 1492.018 kb on + strandat 1492.018 kb on + strandat 1492.018 kb on + strandat 1492.018 kb on + strandat 1492.018 kb on + strandat 1492.018 kb on + strandat 1492.018 kb on + strandat 1492.018 kb on + strandat 1492.018 kb on + strandat 1492.018 kb on + strandat 1492.018 kb on + strandat 1492.019 kb on - strandat 1492.019 kb on - strandat 1492.019 kb on - strandat 1492.019 kb on - strandat 1492.019 kb on - strandat 1492.019 kb on - strandat 1492.019 kb on - strandat 1492.019 kb on - strandat 1492.022 kb on + strandat 1492.022 kb on + strandat 1492.022 kb on + strandat 1492.022 kb on + strandat 1492.022 kb on + strandat 1492.023 kb on - strandat 1492.023 kb on - strandat 1492.024 kb on + strandat 1492.102 kb on + strandat 1492.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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1,489,121 + PfGW456L13_1343 0.75 +0.7
1,489,121 + PfGW456L13_1343 0.75 +1.0
1,489,121 + PfGW456L13_1343 0.75 +0.6
1,489,121 + PfGW456L13_1343 0.75 -0.7
1,489,121 + PfGW456L13_1343 0.75 -0.2
1,489,121 + PfGW456L13_1343 0.75 +1.2
1,489,121 + PfGW456L13_1343 0.75 +0.5
1,489,121 + PfGW456L13_1343 0.75 -0.4
1,489,122 - PfGW456L13_1343 0.75 +0.2
1,489,122 - PfGW456L13_1343 0.75 +0.2
1,489,122 - PfGW456L13_1343 0.75 -1.1
1,489,122 - PfGW456L13_1343 0.75 -0.4
1,489,122 - PfGW456L13_1343 0.75 -0.4
1,489,122 - PfGW456L13_1343 0.75 +0.4
1,489,122 - PfGW456L13_1343 0.75 +0.2
1,489,122 - PfGW456L13_1343 0.75 -0.4
1,489,122 - PfGW456L13_1343 0.75 +0.3
1,489,122 - PfGW456L13_1343 0.75 +1.6
1,489,167 + PfGW456L13_1343 0.77 +0.9
1,489,167 + PfGW456L13_1343 0.77 +0.5
1,489,167 + PfGW456L13_1343 0.77 +1.1
1,489,168 - PfGW456L13_1343 0.77 +0.4
1,489,168 - PfGW456L13_1343 0.77 +0.4
1,489,168 - PfGW456L13_1343 0.77 +0.5
1,489,276 + PfGW456L13_1343 0.83 +0.2
1,489,276 + PfGW456L13_1343 0.83 -1.8
1,489,277 - PfGW456L13_1343 0.83 -0.0
1,489,307 - PfGW456L13_1343 0.84 -0.7
1,489,346 + PfGW456L13_1343 0.86 +0.4
1,489,346 + PfGW456L13_1343 0.86 +0.4
1,489,347 - PfGW456L13_1343 0.86 +0.7
1,489,358 + PfGW456L13_1343 0.87 +0.5
1,489,358 + PfGW456L13_1343 0.87 +0.1
1,489,358 + PfGW456L13_1343 0.87 -0.5
1,489,358 + PfGW456L13_1343 0.87 -0.1
1,489,358 + PfGW456L13_1343 0.87 +0.9
1,489,358 + PfGW456L13_1343 0.87 +0.4
1,489,359 - PfGW456L13_1343 0.87 +0.1
1,489,359 - PfGW456L13_1343 0.87 +0.8
1,489,359 - PfGW456L13_1343 0.87 -0.3
1,489,359 - PfGW456L13_1343 0.87 +0.0
1,489,359 - PfGW456L13_1343 0.87 +0.0
1,489,435 + -0.1
1,489,436 - +0.5
1,489,495 + +0.2
1,489,526 + +0.6
1,489,526 + -0.1
1,489,526 + -0.4
1,489,527 - +1.0
1,489,527 - -0.8
1,489,535 + +1.2
1,489,565 + -0.1
1,489,649 + -1.2
1,489,649 + -0.1
1,489,650 - -0.5
1,489,729 + -0.3
1,489,729 + +0.4
1,489,734 + -1.2
1,489,752 + -0.7
1,489,752 + -0.5
1,489,776 + +0.5
1,489,776 + +0.1
1,489,776 + -0.5
1,489,776 + -0.1
1,489,776 + -1.2
1,489,776 + +0.2
1,489,785 + -0.3
1,489,785 + -0.0
1,489,921 + PfGW456L13_1344 0.12 -0.3
1,489,921 + PfGW456L13_1344 0.12 +3.0
1,489,921 + PfGW456L13_1344 0.12 -0.2
1,490,002 + PfGW456L13_1344 0.18 +0.7
1,490,026 + PfGW456L13_1344 0.19 +0.5
1,490,743 + PfGW456L13_1344 0.72 -0.2
1,490,743 + PfGW456L13_1344 0.72 -2.1
1,490,743 + PfGW456L13_1344 0.72 +0.9
1,491,741 + +1.0
1,491,741 + +0.2
1,491,741 + -0.6
1,491,742 - -0.4
1,491,742 - -0.1
1,491,742 - -0.1
1,491,856 + PfGW456L13_1346 0.42 -1.2
1,491,856 + PfGW456L13_1346 0.42 +0.7
1,491,856 + PfGW456L13_1346 0.42 -0.1
1,491,856 + PfGW456L13_1346 0.42 -0.5
1,491,857 - PfGW456L13_1346 0.42 -0.0
1,491,857 - PfGW456L13_1346 0.42 -0.2
1,491,913 + PfGW456L13_1346 0.62 -0.3
1,491,986 + PfGW456L13_1346 0.88 +1.1
1,491,987 - PfGW456L13_1346 0.88 +0.2
1,492,018 + -0.3
1,492,018 + -0.1
1,492,018 + +0.3
1,492,018 + +1.1
1,492,018 + -0.2
1,492,018 + -0.6
1,492,018 + -0.1
1,492,018 + +0.5
1,492,018 + -1.2
1,492,018 + -0.3
1,492,018 + +1.2
1,492,019 - +0.1
1,492,019 - +0.1
1,492,019 - -2.2
1,492,019 - +0.4
1,492,019 - +0.2
1,492,019 - +0.1
1,492,019 - +0.7
1,492,019 - +0.7
1,492,022 + -0.0
1,492,022 + -0.7
1,492,022 + +0.1
1,492,022 + -0.4
1,492,022 + +0.9
1,492,023 - +0.5
1,492,023 - +0.5
1,492,024 + +0.3
1,492,102 + -0.2
1,492,103 - +0.5

Or see this region's nucleotide sequence