Strain Fitness in Pseudomonas sp. S08-1 around OH686_07920

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_07915 and OH686_07920 are separated by 51 nucleotidesOH686_07920 and OH686_07925 overlap by 4 nucleotides OH686_07915: OH686_07915 - glutamyl-tRNA reductase, at 1,617,288 to 1,618,556 _07915 OH686_07920: OH686_07920 - CDS, at 1,618,608 to 1,618,727 _07920 OH686_07925: OH686_07925 - TPR domain protein, at 1,618,724 to 1,620,451 _07925 Position (kb) 1618 1619Strain fitness (log2 ratio) -3 -2 -1 0 1at 1618.599 kb on - strandat 1618.599 kb on - strandat 1618.599 kb on - strandat 1618.719 kb on + strandat 1618.719 kb on + strandat 1618.719 kb on + strandat 1618.719 kb on + strandat 1618.719 kb on + strandat 1618.719 kb on + strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.720 kb on - strandat 1618.723 kb on + strandat 1618.723 kb on + strandat 1618.723 kb on + strandat 1618.723 kb on + strandat 1618.723 kb on + strandat 1618.724 kb on - strandat 1618.724 kb on - strandat 1618.856 kb on + strandat 1618.856 kb on + strandat 1618.883 kb on + strandat 1618.883 kb on + strandat 1618.946 kb on + strand, within OH686_07925at 1618.946 kb on + strand, within OH686_07925at 1618.946 kb on + strand, within OH686_07925at 1618.946 kb on + strand, within OH686_07925at 1618.946 kb on + strand, within OH686_07925at 1618.946 kb on + strand, within OH686_07925at 1619.127 kb on - strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.144 kb on + strand, within OH686_07925at 1619.146 kb on + strand, within OH686_07925at 1619.501 kb on + strand, within OH686_07925at 1619.501 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925at 1619.717 kb on + strand, within OH686_07925

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,618,599 - -0.3
1,618,599 - -0.2
1,618,599 - -0.7
1,618,719 + +0.0
1,618,719 + -0.6
1,618,719 + -0.1
1,618,719 + +0.1
1,618,719 + +0.8
1,618,719 + +0.3
1,618,720 - +0.3
1,618,720 - -0.4
1,618,720 - -1.2
1,618,720 - -1.0
1,618,720 - +0.6
1,618,720 - -1.2
1,618,720 - -0.1
1,618,720 - +0.5
1,618,720 - -0.7
1,618,720 - -0.4
1,618,720 - +0.8
1,618,723 + -0.3
1,618,723 + +0.3
1,618,723 + -0.4
1,618,723 + -0.3
1,618,723 + +0.5
1,618,724 - +0.5
1,618,724 - +0.3
1,618,856 + -2.5
1,618,856 + -1.5
1,618,883 + -0.0
1,618,883 + -0.3
1,618,946 + OH686_07925 0.13 -0.8
1,618,946 + OH686_07925 0.13 -0.4
1,618,946 + OH686_07925 0.13 -2.2
1,618,946 + OH686_07925 0.13 -0.0
1,618,946 + OH686_07925 0.13 -0.2
1,618,946 + OH686_07925 0.13 -0.6
1,619,127 - OH686_07925 0.23 -1.5
1,619,144 + OH686_07925 0.24 -1.3
1,619,144 + OH686_07925 0.24 -0.7
1,619,144 + OH686_07925 0.24 -0.7
1,619,144 + OH686_07925 0.24 -1.5
1,619,144 + OH686_07925 0.24 -1.0
1,619,144 + OH686_07925 0.24 -1.4
1,619,144 + OH686_07925 0.24 -0.7
1,619,144 + OH686_07925 0.24 -2.6
1,619,144 + OH686_07925 0.24 -2.0
1,619,146 + OH686_07925 0.24 -0.6
1,619,501 + OH686_07925 0.45 -2.9
1,619,501 + OH686_07925 0.45 -0.6
1,619,717 + OH686_07925 0.57 -0.5
1,619,717 + OH686_07925 0.57 -3.2
1,619,717 + OH686_07925 0.57 -1.7
1,619,717 + OH686_07925 0.57 -2.6
1,619,717 + OH686_07925 0.57 -1.1
1,619,717 + OH686_07925 0.57 -2.5
1,619,717 + OH686_07925 0.57 -1.0
1,619,717 + OH686_07925 0.57 -0.5

Or see this region's nucleotide sequence