Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4373

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4371 and EX28DRAFT_4372 are separated by 199 nucleotidesEX28DRAFT_4372 and EX28DRAFT_4373 are separated by 2 nucleotidesEX28DRAFT_4373 and EX28DRAFT_4374 are separated by 39 nucleotidesEX28DRAFT_4374 and EX28DRAFT_4375 overlap by 4 nucleotides EX28DRAFT_4371: EX28DRAFT_4371 - Esterase/lipase, at 36,912 to 37,832 _4371 EX28DRAFT_4372: EX28DRAFT_4372 - Ribbon-helix-helix protein, copG family, at 38,032 to 38,274 _4372 EX28DRAFT_4373: EX28DRAFT_4373 - Predicted nucleic acid-binding protein, contains PIN domain, at 38,277 to 38,648 _4373 EX28DRAFT_4374: EX28DRAFT_4374 - formate dehydrogenase accessory protein FdhE, at 38,688 to 39,617 _4374 EX28DRAFT_4375: EX28DRAFT_4375 - formate dehydrogenase, gamma subunit, at 39,614 to 40,249 _4375 Position (kb) 38 39Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 37.291 kb on + strand, within EX28DRAFT_4371at 37.294 kb on - strand, within EX28DRAFT_4371at 37.295 kb on + strand, within EX28DRAFT_4371at 37.296 kb on - strand, within EX28DRAFT_4371at 37.296 kb on - strand, within EX28DRAFT_4371at 37.296 kb on - strand, within EX28DRAFT_4371at 37.296 kb on - strand, within EX28DRAFT_4371at 37.296 kb on - strand, within EX28DRAFT_4371at 37.301 kb on + strand, within EX28DRAFT_4371at 37.301 kb on + strand, within EX28DRAFT_4371at 37.302 kb on - strand, within EX28DRAFT_4371at 37.308 kb on + strand, within EX28DRAFT_4371at 37.309 kb on - strand, within EX28DRAFT_4371at 37.403 kb on + strand, within EX28DRAFT_4371at 37.404 kb on - strand, within EX28DRAFT_4371at 37.404 kb on - strand, within EX28DRAFT_4371at 37.404 kb on - strand, within EX28DRAFT_4371at 37.481 kb on + strand, within EX28DRAFT_4371at 37.482 kb on - strand, within EX28DRAFT_4371at 37.482 kb on - strand, within EX28DRAFT_4371at 37.482 kb on - strand, within EX28DRAFT_4371at 37.482 kb on - strand, within EX28DRAFT_4371at 37.532 kb on - strand, within EX28DRAFT_4371at 37.583 kb on + strand, within EX28DRAFT_4371at 37.600 kb on + strand, within EX28DRAFT_4371at 37.603 kb on + strand, within EX28DRAFT_4371at 37.603 kb on + strand, within EX28DRAFT_4371at 37.604 kb on - strand, within EX28DRAFT_4371at 37.604 kb on - strand, within EX28DRAFT_4371at 37.634 kb on + strand, within EX28DRAFT_4371at 37.635 kb on - strand, within EX28DRAFT_4371at 37.635 kb on - strand, within EX28DRAFT_4371at 37.732 kb on + strand, within EX28DRAFT_4371at 37.732 kb on + strand, within EX28DRAFT_4371at 37.732 kb on + strand, within EX28DRAFT_4371at 37.733 kb on - strand, within EX28DRAFT_4371at 37.859 kb on + strandat 37.860 kb on - strandat 37.879 kb on + strandat 37.880 kb on - strandat 37.953 kb on + strandat 37.953 kb on + strandat 37.987 kb on + strandat 37.987 kb on + strandat 37.988 kb on - strandat 38.019 kb on - strandat 38.019 kb on - strandat 38.022 kb on - strandat 38.031 kb on + strandat 38.031 kb on + strandat 38.032 kb on - strandat 38.032 kb on - strandat 38.090 kb on + strand, within EX28DRAFT_4372at 38.091 kb on - strand, within EX28DRAFT_4372at 38.167 kb on + strand, within EX28DRAFT_4372at 38.168 kb on - strand, within EX28DRAFT_4372at 38.246 kb on - strand, within EX28DRAFT_4372at 38.272 kb on + strandat 38.273 kb on - strandat 38.307 kb on - strandat 38.307 kb on - strandat 38.307 kb on - strandat 38.307 kb on - strandat 38.325 kb on - strand, within EX28DRAFT_4373at 38.597 kb on + strand, within EX28DRAFT_4373at 38.646 kb on + strandat 38.685 kb on + strandat 38.685 kb on + strandat 38.685 kb on + strandat 38.689 kb on + strandat 38.689 kb on + strandat 38.689 kb on + strandat 38.837 kb on - strand, within EX28DRAFT_4374at 38.837 kb on - strand, within EX28DRAFT_4374at 38.899 kb on + strand, within EX28DRAFT_4374at 38.899 kb on + strand, within EX28DRAFT_4374at 38.899 kb on + strand, within EX28DRAFT_4374at 38.900 kb on - strand, within EX28DRAFT_4374at 38.900 kb on - strand, within EX28DRAFT_4374at 39.119 kb on - strand, within EX28DRAFT_4374at 39.141 kb on - strand, within EX28DRAFT_4374at 39.556 kb on + strandat 39.557 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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37,291 + EX28DRAFT_4371 0.41 -0.1
37,294 - EX28DRAFT_4371 0.41 +1.4
37,295 + EX28DRAFT_4371 0.42 -0.0
37,296 - EX28DRAFT_4371 0.42 +0.1
37,296 - EX28DRAFT_4371 0.42 -3.0
37,296 - EX28DRAFT_4371 0.42 -0.5
37,296 - EX28DRAFT_4371 0.42 +0.5
37,296 - EX28DRAFT_4371 0.42 +0.9
37,301 + EX28DRAFT_4371 0.42 +0.2
37,301 + EX28DRAFT_4371 0.42 +0.5
37,302 - EX28DRAFT_4371 0.42 -0.8
37,308 + EX28DRAFT_4371 0.43 +0.1
37,309 - EX28DRAFT_4371 0.43 -0.5
37,403 + EX28DRAFT_4371 0.53 -0.5
37,404 - EX28DRAFT_4371 0.53 -0.9
37,404 - EX28DRAFT_4371 0.53 +0.1
37,404 - EX28DRAFT_4371 0.53 +0.1
37,481 + EX28DRAFT_4371 0.62 +0.3
37,482 - EX28DRAFT_4371 0.62 -1.2
37,482 - EX28DRAFT_4371 0.62 +0.4
37,482 - EX28DRAFT_4371 0.62 +0.1
37,482 - EX28DRAFT_4371 0.62 +0.2
37,532 - EX28DRAFT_4371 0.67 -0.4
37,583 + EX28DRAFT_4371 0.73 -0.2
37,600 + EX28DRAFT_4371 0.75 -3.3
37,603 + EX28DRAFT_4371 0.75 +0.4
37,603 + EX28DRAFT_4371 0.75 -0.8
37,604 - EX28DRAFT_4371 0.75 +0.5
37,604 - EX28DRAFT_4371 0.75 -0.4
37,634 + EX28DRAFT_4371 0.78 +0.4
37,635 - EX28DRAFT_4371 0.79 -1.8
37,635 - EX28DRAFT_4371 0.79 +0.6
37,732 + EX28DRAFT_4371 0.89 -2.9
37,732 + EX28DRAFT_4371 0.89 +1.2
37,732 + EX28DRAFT_4371 0.89 +1.0
37,733 - EX28DRAFT_4371 0.89 -0.3
37,859 + -2.2
37,860 - -1.7
37,879 + -1.1
37,880 - -0.5
37,953 + +0.5
37,953 + +0.7
37,987 + +0.4
37,987 + -0.1
37,988 - +0.5
38,019 - +1.4
38,019 - -0.7
38,022 - -1.2
38,031 + -0.3
38,031 + +2.0
38,032 - -3.2
38,032 - -5.0
38,090 + EX28DRAFT_4372 0.24 -0.2
38,091 - EX28DRAFT_4372 0.24 +0.6
38,167 + EX28DRAFT_4372 0.56 -0.3
38,168 - EX28DRAFT_4372 0.56 +0.1
38,246 - EX28DRAFT_4372 0.88 +1.2
38,272 + +1.7
38,273 - +0.3
38,307 - -3.2
38,307 - +1.1
38,307 - -1.1
38,307 - -1.8
38,325 - EX28DRAFT_4373 0.13 -1.0
38,597 + EX28DRAFT_4373 0.86 -0.1
38,646 + -0.1
38,685 + +0.8
38,685 + +0.2
38,685 + +0.4
38,689 + +0.7
38,689 + -0.1
38,689 + -0.1
38,837 - EX28DRAFT_4374 0.16 -0.7
38,837 - EX28DRAFT_4374 0.16 -0.8
38,899 + EX28DRAFT_4374 0.23 -0.1
38,899 + EX28DRAFT_4374 0.23 +1.3
38,899 + EX28DRAFT_4374 0.23 +0.2
38,900 - EX28DRAFT_4374 0.23 -4.2
38,900 - EX28DRAFT_4374 0.23 +0.5
39,119 - EX28DRAFT_4374 0.46 -0.5
39,141 - EX28DRAFT_4374 0.49 -1.9
39,556 + -0.5
39,557 - +0.1

Or see this region's nucleotide sequence