Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2659 and EX28DRAFT_2660 are separated by 10 nucleotides EX28DRAFT_2660 and EX28DRAFT_2661 are separated by 6 nucleotides EX28DRAFT_2661 and EX28DRAFT_2662 overlap by 8 nucleotides EX28DRAFT_2662 and EX28DRAFT_2663 overlap by 8 nucleotides
EX28DRAFT_2659: EX28DRAFT_2659 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit, at 2,696,362 to 2,697,585
_2659
EX28DRAFT_2660: EX28DRAFT_2660 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit, at 2,697,596 to 2,698,192
_2660
EX28DRAFT_2661: EX28DRAFT_2661 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit, at 2,698,199 to 2,698,837
_2661
EX28DRAFT_2662: EX28DRAFT_2662 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit, at 2,698,830 to 2,699,624
_2662
EX28DRAFT_2663: EX28DRAFT_2663 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit, at 2,699,617 to 2,700,852
_2663
Position (kb)
2698
2699 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2697.341 kb on - strand, within EX28DRAFT_2659 at 2697.475 kb on - strand at 2697.544 kb on + strand at 2697.544 kb on + strand at 2697.597 kb on + strand at 2697.597 kb on + strand at 2697.600 kb on - strand at 2697.622 kb on + strand at 2697.623 kb on - strand at 2697.769 kb on - strand, within EX28DRAFT_2660 at 2697.769 kb on - strand, within EX28DRAFT_2660 at 2697.774 kb on - strand, within EX28DRAFT_2660 at 2697.792 kb on + strand, within EX28DRAFT_2660 at 2697.808 kb on + strand, within EX28DRAFT_2660 at 2697.891 kb on + strand, within EX28DRAFT_2660 at 2697.891 kb on + strand, within EX28DRAFT_2660 at 2697.891 kb on + strand, within EX28DRAFT_2660 at 2697.892 kb on - strand, within EX28DRAFT_2660 at 2697.896 kb on - strand, within EX28DRAFT_2660 at 2698.114 kb on + strand, within EX28DRAFT_2660 at 2698.114 kb on + strand, within EX28DRAFT_2660 at 2698.115 kb on - strand, within EX28DRAFT_2660 at 2698.115 kb on - strand, within EX28DRAFT_2660 at 2698.232 kb on - strand at 2698.468 kb on - strand, within EX28DRAFT_2661 at 2698.468 kb on - strand, within EX28DRAFT_2661 at 2698.546 kb on - strand, within EX28DRAFT_2661 at 2698.654 kb on + strand, within EX28DRAFT_2661 at 2698.807 kb on + strand at 2698.857 kb on + strand at 2698.858 kb on - strand at 2699.107 kb on + strand, within EX28DRAFT_2662 at 2699.108 kb on - strand, within EX28DRAFT_2662 at 2699.110 kb on + strand, within EX28DRAFT_2662 at 2699.111 kb on - strand, within EX28DRAFT_2662 at 2699.161 kb on + strand, within EX28DRAFT_2662 at 2699.161 kb on + strand, within EX28DRAFT_2662 at 2699.161 kb on + strand, within EX28DRAFT_2662 at 2699.188 kb on + strand, within EX28DRAFT_2662 at 2699.188 kb on + strand, within EX28DRAFT_2662 at 2699.189 kb on - strand, within EX28DRAFT_2662 at 2699.193 kb on - strand, within EX28DRAFT_2662 at 2699.214 kb on - strand, within EX28DRAFT_2662 at 2699.240 kb on - strand, within EX28DRAFT_2662 at 2699.402 kb on + strand, within EX28DRAFT_2662 at 2699.549 kb on + strand at 2699.549 kb on + strand at 2699.549 kb on + strand at 2699.550 kb on - strand at 2699.778 kb on - strand, within EX28DRAFT_2663 at 2699.787 kb on + strand, within EX28DRAFT_2663 at 2699.788 kb on - strand, within EX28DRAFT_2663 at 2699.799 kb on + strand, within EX28DRAFT_2663
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,697,341 - EX28DRAFT_2659 0.80 -1.1 2,697,475 - -3.7 2,697,544 + +0.3 2,697,544 + -1.8 2,697,597 + +0.1 2,697,597 + +0.3 2,697,600 - -1.8 2,697,622 + +0.2 2,697,623 - -0.1 2,697,769 - EX28DRAFT_2660 0.29 -0.5 2,697,769 - EX28DRAFT_2660 0.29 -0.4 2,697,774 - EX28DRAFT_2660 0.30 -0.3 2,697,792 + EX28DRAFT_2660 0.33 -4.4 2,697,808 + EX28DRAFT_2660 0.36 -0.0 2,697,891 + EX28DRAFT_2660 0.49 -0.3 2,697,891 + EX28DRAFT_2660 0.49 +0.8 2,697,891 + EX28DRAFT_2660 0.49 +1.7 2,697,892 - EX28DRAFT_2660 0.50 -0.4 2,697,896 - EX28DRAFT_2660 0.50 -0.3 2,698,114 + EX28DRAFT_2660 0.87 -1.1 2,698,114 + EX28DRAFT_2660 0.87 -0.0 2,698,115 - EX28DRAFT_2660 0.87 -0.6 2,698,115 - EX28DRAFT_2660 0.87 -0.1 2,698,232 - +1.3 2,698,468 - EX28DRAFT_2661 0.42 -4.0 2,698,468 - EX28DRAFT_2661 0.42 -0.3 2,698,546 - EX28DRAFT_2661 0.54 +0.2 2,698,654 + EX28DRAFT_2661 0.71 -0.6 2,698,807 + -0.7 2,698,857 + -1.2 2,698,858 - -0.1 2,699,107 + EX28DRAFT_2662 0.35 -0.3 2,699,108 - EX28DRAFT_2662 0.35 -0.2 2,699,110 + EX28DRAFT_2662 0.35 -1.5 2,699,111 - EX28DRAFT_2662 0.35 +0.2 2,699,161 + EX28DRAFT_2662 0.42 +0.5 2,699,161 + EX28DRAFT_2662 0.42 -0.0 2,699,161 + EX28DRAFT_2662 0.42 -0.6 2,699,188 + EX28DRAFT_2662 0.45 -0.2 2,699,188 + EX28DRAFT_2662 0.45 +0.0 2,699,189 - EX28DRAFT_2662 0.45 -0.5 2,699,193 - EX28DRAFT_2662 0.46 +0.4 2,699,214 - EX28DRAFT_2662 0.48 +1.3 2,699,240 - EX28DRAFT_2662 0.52 -2.1 2,699,402 + EX28DRAFT_2662 0.72 +0.1 2,699,549 + -0.5 2,699,549 + -0.2 2,699,549 + +0.2 2,699,550 - -2.1 2,699,778 - EX28DRAFT_2663 0.13 -0.5 2,699,787 + EX28DRAFT_2663 0.14 -0.3 2,699,788 - EX28DRAFT_2663 0.14 -0.2 2,699,799 + EX28DRAFT_2663 0.15 +0.0
Or see this region's nucleotide sequence