Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2356

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2354 and EX28DRAFT_2355 overlap by 4 nucleotidesEX28DRAFT_2355 and EX28DRAFT_2356 overlap by 4 nucleotidesEX28DRAFT_2356 and EX28DRAFT_2357 are separated by 59 nucleotidesEX28DRAFT_2357 and EX28DRAFT_2358 are separated by 42 nucleotides EX28DRAFT_2354: EX28DRAFT_2354 - methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109), at 2,375,367 to 2,375,981 _2354 EX28DRAFT_2355: EX28DRAFT_2355 - 2,3-diketo-5-methylthio-1-phosphopentane phosphatase, at 2,375,978 to 2,376,667 _2355 EX28DRAFT_2356: EX28DRAFT_2356 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 2,376,664 to 2,377,206 _2356 EX28DRAFT_2357: EX28DRAFT_2357 - Uncharacterized conserved protein, at 2,377,266 to 2,377,736 _2357 EX28DRAFT_2358: EX28DRAFT_2358 - S-methyl-5-thioribose-1-phosphate isomerase, at 2,377,779 to 2,378,795 _2358 Position (kb) 2376 2377 2378Strain fitness (log2 ratio) -2 -1 0 1 2at 2375.846 kb on + strand, within EX28DRAFT_2354at 2375.846 kb on + strand, within EX28DRAFT_2354at 2375.847 kb on - strand, within EX28DRAFT_2354at 2375.878 kb on + strand, within EX28DRAFT_2354at 2375.929 kb on + strandat 2375.930 kb on - strandat 2375.939 kb on - strandat 2376.193 kb on + strand, within EX28DRAFT_2355at 2376.297 kb on + strand, within EX28DRAFT_2355at 2376.409 kb on + strand, within EX28DRAFT_2355at 2376.429 kb on - strand, within EX28DRAFT_2355at 2376.682 kb on + strandat 2376.798 kb on - strand, within EX28DRAFT_2356at 2376.954 kb on + strand, within EX28DRAFT_2356at 2377.030 kb on + strand, within EX28DRAFT_2356at 2377.030 kb on + strand, within EX28DRAFT_2356at 2377.030 kb on + strand, within EX28DRAFT_2356at 2377.116 kb on + strand, within EX28DRAFT_2356at 2377.128 kb on + strand, within EX28DRAFT_2356at 2377.129 kb on - strand, within EX28DRAFT_2356at 2377.204 kb on + strandat 2377.205 kb on - strandat 2377.205 kb on - strandat 2377.288 kb on + strandat 2377.289 kb on - strandat 2377.473 kb on - strand, within EX28DRAFT_2357at 2377.522 kb on - strand, within EX28DRAFT_2357at 2377.710 kb on + strandat 2377.711 kb on - strandat 2377.711 kb on - strandat 2377.763 kb on + strandat 2377.882 kb on + strand, within EX28DRAFT_2358at 2377.883 kb on - strand, within EX28DRAFT_2358at 2378.026 kb on + strand, within EX28DRAFT_2358at 2378.027 kb on - strand, within EX28DRAFT_2358at 2378.027 kb on - strand, within EX28DRAFT_2358at 2378.069 kb on - strand, within EX28DRAFT_2358at 2378.069 kb on - strand, within EX28DRAFT_2358

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,375,846 + EX28DRAFT_2354 0.78 +0.6
2,375,846 + EX28DRAFT_2354 0.78 +0.6
2,375,847 - EX28DRAFT_2354 0.78 +0.3
2,375,878 + EX28DRAFT_2354 0.83 -0.2
2,375,929 + +0.3
2,375,930 - -0.4
2,375,939 - -0.8
2,376,193 + EX28DRAFT_2355 0.31 -1.4
2,376,297 + EX28DRAFT_2355 0.46 -0.7
2,376,409 + EX28DRAFT_2355 0.62 +0.1
2,376,429 - EX28DRAFT_2355 0.65 +0.4
2,376,682 + +0.0
2,376,798 - EX28DRAFT_2356 0.25 -0.0
2,376,954 + EX28DRAFT_2356 0.53 -0.8
2,377,030 + EX28DRAFT_2356 0.67 +0.4
2,377,030 + EX28DRAFT_2356 0.67 -0.9
2,377,030 + EX28DRAFT_2356 0.67 +1.1
2,377,116 + EX28DRAFT_2356 0.83 +0.4
2,377,128 + EX28DRAFT_2356 0.85 -0.6
2,377,129 - EX28DRAFT_2356 0.86 +1.8
2,377,204 + +0.4
2,377,205 - +1.3
2,377,205 - -0.0
2,377,288 + +0.3
2,377,289 - +1.5
2,377,473 - EX28DRAFT_2357 0.44 +0.1
2,377,522 - EX28DRAFT_2357 0.54 -0.0
2,377,710 + -0.4
2,377,711 - +0.1
2,377,711 - +0.7
2,377,763 + -0.1
2,377,882 + EX28DRAFT_2358 0.10 -2.0
2,377,883 - EX28DRAFT_2358 0.10 -0.9
2,378,026 + EX28DRAFT_2358 0.24 -1.0
2,378,027 - EX28DRAFT_2358 0.24 +0.0
2,378,027 - EX28DRAFT_2358 0.24 -1.2
2,378,069 - EX28DRAFT_2358 0.29 -1.2
2,378,069 - EX28DRAFT_2358 0.29 +0.2

Or see this region's nucleotide sequence