Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2354 and EX28DRAFT_2355 overlap by 4 nucleotides EX28DRAFT_2355 and EX28DRAFT_2356 overlap by 4 nucleotides EX28DRAFT_2356 and EX28DRAFT_2357 are separated by 59 nucleotides EX28DRAFT_2357 and EX28DRAFT_2358 are separated by 42 nucleotides
EX28DRAFT_2354: EX28DRAFT_2354 - methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109), at 2,375,367 to 2,375,981
_2354
EX28DRAFT_2355: EX28DRAFT_2355 - 2,3-diketo-5-methylthio-1-phosphopentane phosphatase, at 2,375,978 to 2,376,667
_2355
EX28DRAFT_2356: EX28DRAFT_2356 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 2,376,664 to 2,377,206
_2356
EX28DRAFT_2357: EX28DRAFT_2357 - Uncharacterized conserved protein, at 2,377,266 to 2,377,736
_2357
EX28DRAFT_2358: EX28DRAFT_2358 - S-methyl-5-thioribose-1-phosphate isomerase, at 2,377,779 to 2,378,795
_2358
Position (kb)
2376
2377
2378 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2375.846 kb on + strand, within EX28DRAFT_2354 at 2375.846 kb on + strand, within EX28DRAFT_2354 at 2375.847 kb on - strand, within EX28DRAFT_2354 at 2375.878 kb on + strand, within EX28DRAFT_2354 at 2375.929 kb on + strand at 2375.930 kb on - strand at 2375.939 kb on - strand at 2376.193 kb on + strand, within EX28DRAFT_2355 at 2376.297 kb on + strand, within EX28DRAFT_2355 at 2376.409 kb on + strand, within EX28DRAFT_2355 at 2376.429 kb on - strand, within EX28DRAFT_2355 at 2376.682 kb on + strand at 2376.798 kb on - strand, within EX28DRAFT_2356 at 2376.954 kb on + strand, within EX28DRAFT_2356 at 2377.030 kb on + strand, within EX28DRAFT_2356 at 2377.030 kb on + strand, within EX28DRAFT_2356 at 2377.030 kb on + strand, within EX28DRAFT_2356 at 2377.116 kb on + strand, within EX28DRAFT_2356 at 2377.128 kb on + strand, within EX28DRAFT_2356 at 2377.129 kb on - strand, within EX28DRAFT_2356 at 2377.204 kb on + strand at 2377.205 kb on - strand at 2377.205 kb on - strand at 2377.288 kb on + strand at 2377.289 kb on - strand at 2377.473 kb on - strand, within EX28DRAFT_2357 at 2377.522 kb on - strand, within EX28DRAFT_2357 at 2377.710 kb on + strand at 2377.711 kb on - strand at 2377.711 kb on - strand at 2377.763 kb on + strand at 2377.882 kb on + strand, within EX28DRAFT_2358 at 2377.883 kb on - strand, within EX28DRAFT_2358 at 2378.026 kb on + strand, within EX28DRAFT_2358 at 2378.027 kb on - strand, within EX28DRAFT_2358 at 2378.027 kb on - strand, within EX28DRAFT_2358 at 2378.069 kb on - strand, within EX28DRAFT_2358 at 2378.069 kb on - strand, within EX28DRAFT_2358
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,375,846 + EX28DRAFT_2354 0.78 +0.6 2,375,846 + EX28DRAFT_2354 0.78 +0.6 2,375,847 - EX28DRAFT_2354 0.78 +0.3 2,375,878 + EX28DRAFT_2354 0.83 -0.2 2,375,929 + +0.3 2,375,930 - -0.4 2,375,939 - -0.8 2,376,193 + EX28DRAFT_2355 0.31 -1.4 2,376,297 + EX28DRAFT_2355 0.46 -0.7 2,376,409 + EX28DRAFT_2355 0.62 +0.1 2,376,429 - EX28DRAFT_2355 0.65 +0.4 2,376,682 + +0.0 2,376,798 - EX28DRAFT_2356 0.25 -0.0 2,376,954 + EX28DRAFT_2356 0.53 -0.8 2,377,030 + EX28DRAFT_2356 0.67 +0.4 2,377,030 + EX28DRAFT_2356 0.67 -0.9 2,377,030 + EX28DRAFT_2356 0.67 +1.1 2,377,116 + EX28DRAFT_2356 0.83 +0.4 2,377,128 + EX28DRAFT_2356 0.85 -0.6 2,377,129 - EX28DRAFT_2356 0.86 +1.8 2,377,204 + +0.4 2,377,205 - +1.3 2,377,205 - -0.0 2,377,288 + +0.3 2,377,289 - +1.5 2,377,473 - EX28DRAFT_2357 0.44 +0.1 2,377,522 - EX28DRAFT_2357 0.54 -0.0 2,377,710 + -0.4 2,377,711 - +0.1 2,377,711 - +0.7 2,377,763 + -0.1 2,377,882 + EX28DRAFT_2358 0.10 -2.0 2,377,883 - EX28DRAFT_2358 0.10 -0.9 2,378,026 + EX28DRAFT_2358 0.24 -1.0 2,378,027 - EX28DRAFT_2358 0.24 +0.0 2,378,027 - EX28DRAFT_2358 0.24 -1.2 2,378,069 - EX28DRAFT_2358 0.29 -1.2 2,378,069 - EX28DRAFT_2358 0.29 +0.2
Or see this region's nucleotide sequence