Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1033

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1031 and EX28DRAFT_1032 are separated by 85 nucleotidesEX28DRAFT_1032 and EX28DRAFT_1033 are separated by 122 nucleotidesEX28DRAFT_1033 and EX28DRAFT_1034 overlap by 4 nucleotides EX28DRAFT_1031: EX28DRAFT_1031 - Protein of unknown function (DUF2566), at 1,038,752 to 1,038,925 _1031 EX28DRAFT_1032: EX28DRAFT_1032 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,039,011 to 1,039,766 _1032 EX28DRAFT_1033: EX28DRAFT_1033 - Uncharacterized protein conserved in bacteria, putative virulence factor, at 1,039,889 to 1,042,066 _1033 EX28DRAFT_1034: EX28DRAFT_1034 - Uncharacterized protein conserved in bacteria, putative virulence factor, at 1,042,063 to 1,045,044 _1034 Position (kb) 1039 1040 1041 1042 1043Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1038.979 kb on + strandat 1038.980 kb on - strandat 1039.010 kb on + strandat 1039.011 kb on - strandat 1039.126 kb on - strand, within EX28DRAFT_1032at 1039.197 kb on + strand, within EX28DRAFT_1032at 1039.218 kb on + strand, within EX28DRAFT_1032at 1039.218 kb on + strand, within EX28DRAFT_1032at 1039.218 kb on + strand, within EX28DRAFT_1032at 1039.218 kb on + strand, within EX28DRAFT_1032at 1039.218 kb on + strand, within EX28DRAFT_1032at 1039.224 kb on + strand, within EX28DRAFT_1032at 1039.225 kb on - strand, within EX28DRAFT_1032at 1039.227 kb on - strand, within EX28DRAFT_1032at 1039.296 kb on + strand, within EX28DRAFT_1032at 1039.418 kb on + strand, within EX28DRAFT_1032at 1039.419 kb on - strand, within EX28DRAFT_1032at 1039.522 kb on - strand, within EX28DRAFT_1032at 1039.754 kb on + strandat 1039.811 kb on + strandat 1039.950 kb on + strandat 1039.977 kb on + strandat 1039.999 kb on - strandat 1040.000 kb on + strandat 1040.001 kb on - strandat 1040.416 kb on + strand, within EX28DRAFT_1033at 1040.417 kb on - strand, within EX28DRAFT_1033at 1040.438 kb on - strand, within EX28DRAFT_1033at 1040.438 kb on - strand, within EX28DRAFT_1033at 1040.438 kb on - strand, within EX28DRAFT_1033at 1040.438 kb on - strand, within EX28DRAFT_1033at 1040.438 kb on - strand, within EX28DRAFT_1033at 1040.631 kb on + strand, within EX28DRAFT_1033at 1041.082 kb on + strand, within EX28DRAFT_1033at 1041.089 kb on - strand, within EX28DRAFT_1033at 1041.089 kb on - strand, within EX28DRAFT_1033at 1041.239 kb on + strand, within EX28DRAFT_1033at 1041.240 kb on - strand, within EX28DRAFT_1033at 1041.614 kb on - strand, within EX28DRAFT_1033at 1041.656 kb on - strand, within EX28DRAFT_1033at 1041.792 kb on + strand, within EX28DRAFT_1033at 1042.034 kb on + strandat 1042.073 kb on + strandat 1042.074 kb on - strandat 1042.076 kb on - strandat 1042.076 kb on - strandat 1042.132 kb on - strandat 1042.313 kb on + strandat 1042.313 kb on + strandat 1042.314 kb on - strandat 1042.509 kb on - strand, within EX28DRAFT_1034at 1042.655 kb on + strand, within EX28DRAFT_1034at 1042.816 kb on - strand, within EX28DRAFT_1034at 1042.935 kb on - strand, within EX28DRAFT_1034at 1042.943 kb on - strand, within EX28DRAFT_1034

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,038,979 + +0.6
1,038,980 - +0.3
1,039,010 + +0.1
1,039,011 - +1.3
1,039,126 - EX28DRAFT_1032 0.15 +0.3
1,039,197 + EX28DRAFT_1032 0.25 +0.2
1,039,218 + EX28DRAFT_1032 0.27 -0.6
1,039,218 + EX28DRAFT_1032 0.27 +0.6
1,039,218 + EX28DRAFT_1032 0.27 -3.0
1,039,218 + EX28DRAFT_1032 0.27 -1.4
1,039,218 + EX28DRAFT_1032 0.27 -0.1
1,039,224 + EX28DRAFT_1032 0.28 +0.6
1,039,225 - EX28DRAFT_1032 0.28 +0.2
1,039,227 - EX28DRAFT_1032 0.29 +2.9
1,039,296 + EX28DRAFT_1032 0.38 -3.6
1,039,418 + EX28DRAFT_1032 0.54 -0.7
1,039,419 - EX28DRAFT_1032 0.54 -0.0
1,039,522 - EX28DRAFT_1032 0.68 -1.0
1,039,754 + -0.8
1,039,811 + +0.9
1,039,950 + +1.3
1,039,977 + -1.5
1,039,999 - +0.5
1,040,000 + -1.9
1,040,001 - -0.4
1,040,416 + EX28DRAFT_1033 0.24 +2.6
1,040,417 - EX28DRAFT_1033 0.24 +0.2
1,040,438 - EX28DRAFT_1033 0.25 -1.2
1,040,438 - EX28DRAFT_1033 0.25 +0.5
1,040,438 - EX28DRAFT_1033 0.25 +0.6
1,040,438 - EX28DRAFT_1033 0.25 +1.3
1,040,438 - EX28DRAFT_1033 0.25 +0.1
1,040,631 + EX28DRAFT_1033 0.34 -0.1
1,041,082 + EX28DRAFT_1033 0.55 +0.4
1,041,089 - EX28DRAFT_1033 0.55 +0.5
1,041,089 - EX28DRAFT_1033 0.55 +1.0
1,041,239 + EX28DRAFT_1033 0.62 +1.2
1,041,240 - EX28DRAFT_1033 0.62 +0.2
1,041,614 - EX28DRAFT_1033 0.79 +1.3
1,041,656 - EX28DRAFT_1033 0.81 +0.6
1,041,792 + EX28DRAFT_1033 0.87 +0.5
1,042,034 + +0.2
1,042,073 + +0.4
1,042,074 - -5.3
1,042,076 - -1.3
1,042,076 - -0.5
1,042,132 - +0.5
1,042,313 + -0.7
1,042,313 + +0.1
1,042,314 - +0.1
1,042,509 - EX28DRAFT_1034 0.15 -0.4
1,042,655 + EX28DRAFT_1034 0.20 -1.3
1,042,816 - EX28DRAFT_1034 0.25 -0.3
1,042,935 - EX28DRAFT_1034 0.29 -0.9
1,042,943 - EX28DRAFT_1034 0.30 -1.0

Or see this region's nucleotide sequence