Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1031 and EX28DRAFT_1032 are separated by 85 nucleotides EX28DRAFT_1032 and EX28DRAFT_1033 are separated by 122 nucleotides EX28DRAFT_1033 and EX28DRAFT_1034 overlap by 4 nucleotides
EX28DRAFT_1031: EX28DRAFT_1031 - Protein of unknown function (DUF2566), at 1,038,752 to 1,038,925
_1031
EX28DRAFT_1032: EX28DRAFT_1032 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,039,011 to 1,039,766
_1032
EX28DRAFT_1033: EX28DRAFT_1033 - Uncharacterized protein conserved in bacteria, putative virulence factor, at 1,039,889 to 1,042,066
_1033
EX28DRAFT_1034: EX28DRAFT_1034 - Uncharacterized protein conserved in bacteria, putative virulence factor, at 1,042,063 to 1,045,044
_1034
Position (kb)
1039
1040
1041
1042
1043 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1038.979 kb on + strand at 1038.980 kb on - strand at 1039.010 kb on + strand at 1039.011 kb on - strand at 1039.126 kb on - strand, within EX28DRAFT_1032 at 1039.197 kb on + strand, within EX28DRAFT_1032 at 1039.218 kb on + strand, within EX28DRAFT_1032 at 1039.218 kb on + strand, within EX28DRAFT_1032 at 1039.218 kb on + strand, within EX28DRAFT_1032 at 1039.218 kb on + strand, within EX28DRAFT_1032 at 1039.218 kb on + strand, within EX28DRAFT_1032 at 1039.224 kb on + strand, within EX28DRAFT_1032 at 1039.225 kb on - strand, within EX28DRAFT_1032 at 1039.227 kb on - strand, within EX28DRAFT_1032 at 1039.296 kb on + strand, within EX28DRAFT_1032 at 1039.418 kb on + strand, within EX28DRAFT_1032 at 1039.419 kb on - strand, within EX28DRAFT_1032 at 1039.522 kb on - strand, within EX28DRAFT_1032 at 1039.754 kb on + strand at 1039.811 kb on + strand at 1039.950 kb on + strand at 1039.977 kb on + strand at 1039.999 kb on - strand at 1040.000 kb on + strand at 1040.001 kb on - strand at 1040.416 kb on + strand, within EX28DRAFT_1033 at 1040.417 kb on - strand, within EX28DRAFT_1033 at 1040.438 kb on - strand, within EX28DRAFT_1033 at 1040.438 kb on - strand, within EX28DRAFT_1033 at 1040.438 kb on - strand, within EX28DRAFT_1033 at 1040.438 kb on - strand, within EX28DRAFT_1033 at 1040.438 kb on - strand, within EX28DRAFT_1033 at 1040.631 kb on + strand, within EX28DRAFT_1033 at 1041.082 kb on + strand, within EX28DRAFT_1033 at 1041.089 kb on - strand, within EX28DRAFT_1033 at 1041.089 kb on - strand, within EX28DRAFT_1033 at 1041.239 kb on + strand, within EX28DRAFT_1033 at 1041.240 kb on - strand, within EX28DRAFT_1033 at 1041.614 kb on - strand, within EX28DRAFT_1033 at 1041.656 kb on - strand, within EX28DRAFT_1033 at 1041.792 kb on + strand, within EX28DRAFT_1033 at 1042.034 kb on + strand at 1042.073 kb on + strand at 1042.074 kb on - strand at 1042.076 kb on - strand at 1042.076 kb on - strand at 1042.132 kb on - strand at 1042.313 kb on + strand at 1042.313 kb on + strand at 1042.314 kb on - strand at 1042.509 kb on - strand, within EX28DRAFT_1034 at 1042.655 kb on + strand, within EX28DRAFT_1034 at 1042.816 kb on - strand, within EX28DRAFT_1034 at 1042.935 kb on - strand, within EX28DRAFT_1034 at 1042.943 kb on - strand, within EX28DRAFT_1034
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,038,979 + +0.6 1,038,980 - +0.3 1,039,010 + +0.1 1,039,011 - +1.3 1,039,126 - EX28DRAFT_1032 0.15 +0.3 1,039,197 + EX28DRAFT_1032 0.25 +0.2 1,039,218 + EX28DRAFT_1032 0.27 -0.6 1,039,218 + EX28DRAFT_1032 0.27 +0.6 1,039,218 + EX28DRAFT_1032 0.27 -3.0 1,039,218 + EX28DRAFT_1032 0.27 -1.4 1,039,218 + EX28DRAFT_1032 0.27 -0.1 1,039,224 + EX28DRAFT_1032 0.28 +0.6 1,039,225 - EX28DRAFT_1032 0.28 +0.2 1,039,227 - EX28DRAFT_1032 0.29 +2.9 1,039,296 + EX28DRAFT_1032 0.38 -3.6 1,039,418 + EX28DRAFT_1032 0.54 -0.7 1,039,419 - EX28DRAFT_1032 0.54 -0.0 1,039,522 - EX28DRAFT_1032 0.68 -1.0 1,039,754 + -0.8 1,039,811 + +0.9 1,039,950 + +1.3 1,039,977 + -1.5 1,039,999 - +0.5 1,040,000 + -1.9 1,040,001 - -0.4 1,040,416 + EX28DRAFT_1033 0.24 +2.6 1,040,417 - EX28DRAFT_1033 0.24 +0.2 1,040,438 - EX28DRAFT_1033 0.25 -1.2 1,040,438 - EX28DRAFT_1033 0.25 +0.5 1,040,438 - EX28DRAFT_1033 0.25 +0.6 1,040,438 - EX28DRAFT_1033 0.25 +1.3 1,040,438 - EX28DRAFT_1033 0.25 +0.1 1,040,631 + EX28DRAFT_1033 0.34 -0.1 1,041,082 + EX28DRAFT_1033 0.55 +0.4 1,041,089 - EX28DRAFT_1033 0.55 +0.5 1,041,089 - EX28DRAFT_1033 0.55 +1.0 1,041,239 + EX28DRAFT_1033 0.62 +1.2 1,041,240 - EX28DRAFT_1033 0.62 +0.2 1,041,614 - EX28DRAFT_1033 0.79 +1.3 1,041,656 - EX28DRAFT_1033 0.81 +0.6 1,041,792 + EX28DRAFT_1033 0.87 +0.5 1,042,034 + +0.2 1,042,073 + +0.4 1,042,074 - -5.3 1,042,076 - -1.3 1,042,076 - -0.5 1,042,132 - +0.5 1,042,313 + -0.7 1,042,313 + +0.1 1,042,314 - +0.1 1,042,509 - EX28DRAFT_1034 0.15 -0.4 1,042,655 + EX28DRAFT_1034 0.20 -1.3 1,042,816 - EX28DRAFT_1034 0.25 -0.3 1,042,935 - EX28DRAFT_1034 0.29 -0.9 1,042,943 - EX28DRAFT_1034 0.30 -1.0
Or see this region's nucleotide sequence