Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27025 and ABID97_RS27030 are separated by 34 nucleotides ABID97_RS27030 and ABID97_RS27035 are separated by 87 nucleotides ABID97_RS27035 and ABID97_RS27040 are separated by 106 nucleotides
ABID97_RS27025: ABID97_RS27025 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 323,697 to 324,722
_RS27025
ABID97_RS27030: ABID97_RS27030 - tripartite tricarboxylate transporter substrate binding protein, at 324,757 to 325,734
_RS27030
ABID97_RS27035: ABID97_RS27035 - nuclear transport factor 2 family protein, at 325,822 to 326,298
_RS27035
ABID97_RS27040: ABID97_RS27040 - NAD(P)/FAD-dependent oxidoreductase, at 326,405 to 328,012
_RS27040
Position (kb) 324
325
326 Strain fitness (log2 ratio) -1
0
1 at 324.121 kb on - strand, within ABID97_RS27025 at 324.133 kb on - strand, within ABID97_RS27025 at 324.340 kb on - strand, within ABID97_RS27025 at 324.348 kb on + strand, within ABID97_RS27025 at 324.486 kb on + strand, within ABID97_RS27025 at 325.066 kb on + strand, within ABID97_RS27030 at 325.220 kb on - strand, within ABID97_RS27030 at 326.083 kb on + strand, within ABID97_RS27035 at 326.084 kb on - strand, within ABID97_RS27035 at 326.176 kb on + strand, within ABID97_RS27035 at 326.177 kb on - strand, within ABID97_RS27035 at 326.297 kb on - strand at 326.310 kb on + strand at 326.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 324,121 - ABID97_RS27025 0.41 +0.6 324,133 - ABID97_RS27025 0.42 +0.1 324,340 - ABID97_RS27025 0.63 -0.6 324,348 + ABID97_RS27025 0.63 -0.3 324,486 + ABID97_RS27025 0.77 -0.3 325,066 + ABID97_RS27030 0.32 -0.3 325,220 - ABID97_RS27030 0.47 -0.0 326,083 + ABID97_RS27035 0.55 -0.0 326,084 - ABID97_RS27035 0.55 +0.8 326,176 + ABID97_RS27035 0.74 -1.2 326,177 - ABID97_RS27035 0.74 +1.2 326,297 - -0.8 326,310 + -0.3 326,368 - +0.0
Or see this region's nucleotide sequence