Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19035 and ABID97_RS19040 are separated by 84 nucleotides ABID97_RS19040 and ABID97_RS19045 are separated by 31 nucleotides ABID97_RS19045 and ABID97_RS19050 are separated by 37 nucleotides
ABID97_RS19035: ABID97_RS19035 - tripartite tricarboxylate transporter substrate binding protein, at 3,917,891 to 3,918,862
_RS19035
ABID97_RS19040: ABID97_RS19040 - isocitrate/isopropylmalate dehydrogenase family protein, at 3,918,947 to 3,920,020
_RS19040
ABID97_RS19045: ABID97_RS19045 - cupin domain-containing protein, at 3,920,052 to 3,920,468
_RS19045
ABID97_RS19050: ABID97_RS19050 - NAD-dependent succinate-semialdehyde dehydrogenase, at 3,920,506 to 3,921,876
_RS19050
Position (kb)
3918
3919
3920
3921 Strain fitness (log2 ratio)
-2
-1
0
1 at 3918.109 kb on - strand, within ABID97_RS19035 at 3918.349 kb on + strand, within ABID97_RS19035 at 3918.466 kb on - strand, within ABID97_RS19035 at 3918.714 kb on + strand, within ABID97_RS19035 at 3918.855 kb on + strand at 3918.948 kb on + strand at 3919.351 kb on - strand, within ABID97_RS19040 at 3920.200 kb on + strand, within ABID97_RS19045 at 3920.200 kb on + strand, within ABID97_RS19045 at 3920.201 kb on - strand, within ABID97_RS19045 at 3920.336 kb on - strand, within ABID97_RS19045 at 3920.485 kb on + strand at 3920.486 kb on - strand at 3920.832 kb on + strand, within ABID97_RS19050 at 3920.896 kb on + strand, within ABID97_RS19050 at 3920.897 kb on - strand, within ABID97_RS19050
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 3,918,109 - ABID97_RS19035 0.22 -1.3 3,918,349 + ABID97_RS19035 0.47 -0.2 3,918,466 - ABID97_RS19035 0.59 -0.4 3,918,714 + ABID97_RS19035 0.85 +0.5 3,918,855 + +0.4 3,918,948 + -0.3 3,919,351 - ABID97_RS19040 0.38 -0.8 3,920,200 + ABID97_RS19045 0.35 -0.5 3,920,200 + ABID97_RS19045 0.35 -0.0 3,920,201 - ABID97_RS19045 0.36 -0.9 3,920,336 - ABID97_RS19045 0.68 -0.1 3,920,485 + -0.7 3,920,486 - -2.0 3,920,832 + ABID97_RS19050 0.24 +0.1 3,920,896 + ABID97_RS19050 0.28 +0.4 3,920,897 - ABID97_RS19050 0.29 -0.1
Or see this region's nucleotide sequence