Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19040

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19035 and ABID97_RS19040 are separated by 84 nucleotidesABID97_RS19040 and ABID97_RS19045 are separated by 31 nucleotidesABID97_RS19045 and ABID97_RS19050 are separated by 37 nucleotides ABID97_RS19035: ABID97_RS19035 - tripartite tricarboxylate transporter substrate binding protein, at 3,917,891 to 3,918,862 _RS19035 ABID97_RS19040: ABID97_RS19040 - isocitrate/isopropylmalate dehydrogenase family protein, at 3,918,947 to 3,920,020 _RS19040 ABID97_RS19045: ABID97_RS19045 - cupin domain-containing protein, at 3,920,052 to 3,920,468 _RS19045 ABID97_RS19050: ABID97_RS19050 - NAD-dependent succinate-semialdehyde dehydrogenase, at 3,920,506 to 3,921,876 _RS19050 Position (kb) 3918 3919 3920 3921Strain fitness (log2 ratio) -2 -1 0 1at 3918.109 kb on - strand, within ABID97_RS19035at 3918.349 kb on + strand, within ABID97_RS19035at 3918.466 kb on - strand, within ABID97_RS19035at 3918.714 kb on + strand, within ABID97_RS19035at 3918.855 kb on + strandat 3918.948 kb on + strandat 3919.351 kb on - strand, within ABID97_RS19040at 3920.200 kb on + strand, within ABID97_RS19045at 3920.200 kb on + strand, within ABID97_RS19045at 3920.201 kb on - strand, within ABID97_RS19045at 3920.336 kb on - strand, within ABID97_RS19045at 3920.485 kb on + strandat 3920.486 kb on - strandat 3920.832 kb on + strand, within ABID97_RS19050at 3920.896 kb on + strand, within ABID97_RS19050at 3920.897 kb on - strand, within ABID97_RS19050

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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3,918,109 - ABID97_RS19035 0.22 -1.3
3,918,349 + ABID97_RS19035 0.47 -0.2
3,918,466 - ABID97_RS19035 0.59 -0.4
3,918,714 + ABID97_RS19035 0.85 +0.5
3,918,855 + +0.4
3,918,948 + -0.3
3,919,351 - ABID97_RS19040 0.38 -0.8
3,920,200 + ABID97_RS19045 0.35 -0.5
3,920,200 + ABID97_RS19045 0.35 -0.0
3,920,201 - ABID97_RS19045 0.36 -0.9
3,920,336 - ABID97_RS19045 0.68 -0.1
3,920,485 + -0.7
3,920,486 - -2.0
3,920,832 + ABID97_RS19050 0.24 +0.1
3,920,896 + ABID97_RS19050 0.28 +0.4
3,920,897 - ABID97_RS19050 0.29 -0.1

Or see this region's nucleotide sequence