Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18430

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18420 and ABID97_RS18425 are separated by 170 nucleotidesABID97_RS18425 and ABID97_RS18430 are separated by 108 nucleotidesABID97_RS18430 and ABID97_RS18435 are separated by 233 nucleotides ABID97_RS18420: ABID97_RS18420 - DUF932 domain-containing protein, at 3,801,045 to 3,802,043 _RS18420 ABID97_RS18425: ABID97_RS18425 - hypothetical protein, at 3,802,214 to 3,802,672 _RS18425 ABID97_RS18430: ABID97_RS18430 - DUF2958 domain-containing protein, at 3,802,781 to 3,803,128 _RS18430 ABID97_RS18435: ABID97_RS18435 - hypothetical protein, at 3,803,362 to 3,804,231 _RS18435 Position (kb) 3802 3803 3804Strain fitness (log2 ratio) -1 0 1at 3802.822 kb on - strand, within ABID97_RS18430at 3803.311 kb on - strandat 3803.311 kb on - strandat 3803.885 kb on + strand, within ABID97_RS18435at 3804.065 kb on + strand, within ABID97_RS18435at 3804.110 kb on + strand, within ABID97_RS18435

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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3,802,822 - ABID97_RS18430 0.12 +0.8
3,803,311 - -1.5
3,803,311 - +0.5
3,803,885 + ABID97_RS18435 0.60 -0.1
3,804,065 + ABID97_RS18435 0.81 -0.6
3,804,110 + ABID97_RS18435 0.86 -0.0

Or see this region's nucleotide sequence