Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02775 and SMc02774 are separated by 108 nucleotides SMc02774 and SMc02773 are separated by 111 nucleotides
SMc02775: SMc02775 - D-arabinose 1-dehydrogenase <small>(from data)</small>, at 18,314 to 19,333
SMc02775
SMc02774: SMc02774 - ABC transporter substrate-binding protein, at 19,442 to 20,431
SMc02774
SMc02773: SMc02773 - ABC transporter ATP-binding protein, at 20,543 to 22,096
SMc02773
Position (kb) 19
20
21 Strain fitness (log2 ratio) -1
0
1
2
3 at 18.479 kb on + strand, within SMc02775 at 18.480 kb on - strand, within SMc02775 at 18.605 kb on + strand, within SMc02775 at 18.606 kb on - strand, within SMc02775 at 18.611 kb on + strand, within SMc02775 at 18.611 kb on + strand, within SMc02775 at 18.612 kb on - strand, within SMc02775 at 18.641 kb on + strand, within SMc02775 at 18.641 kb on + strand, within SMc02775 at 18.641 kb on + strand, within SMc02775 at 18.641 kb on + strand, within SMc02775 at 18.642 kb on - strand, within SMc02775 at 18.642 kb on - strand, within SMc02775 at 18.642 kb on - strand, within SMc02775 at 18.647 kb on + strand, within SMc02775 at 18.653 kb on + strand, within SMc02775 at 18.687 kb on - strand, within SMc02775 at 18.722 kb on + strand, within SMc02775 at 18.723 kb on - strand, within SMc02775 at 18.773 kb on + strand, within SMc02775 at 18.773 kb on + strand, within SMc02775 at 19.064 kb on + strand, within SMc02775 at 19.114 kb on + strand, within SMc02775 at 19.289 kb on - strand at 19.289 kb on - strand at 19.369 kb on + strand at 19.369 kb on + strand at 19.370 kb on - strand at 19.450 kb on - strand at 19.876 kb on - strand, within SMc02774 at 19.945 kb on + strand, within SMc02774 at 20.016 kb on - strand, within SMc02774 at 20.045 kb on + strand, within SMc02774 at 20.045 kb on + strand, within SMc02774 at 20.045 kb on + strand, within SMc02774 at 20.046 kb on - strand, within SMc02774 at 20.292 kb on - strand, within SMc02774 at 20.292 kb on - strand, within SMc02774 at 20.292 kb on - strand, within SMc02774 at 20.292 kb on - strand, within SMc02774 at 20.354 kb on - strand at 20.383 kb on + strand at 20.384 kb on - strand at 20.384 kb on - strand at 20.547 kb on + strand at 21.200 kb on + strand, within SMc02773 at 21.201 kb on - strand, within SMc02773 at 21.201 kb on - strand, within SMc02773 at 21.351 kb on - strand, within SMc02773 at 21.426 kb on + strand, within SMc02773 at 21.426 kb on + strand, within SMc02773 at 21.427 kb on - strand, within SMc02773 at 21.427 kb on - strand, within SMc02773 at 21.427 kb on - strand, within SMc02773 at 21.427 kb on - strand, within SMc02773 at 21.427 kb on - strand, within SMc02773
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 18,479 + SMc02775 0.16 -0.5 18,480 - SMc02775 0.16 +0.0 18,605 + SMc02775 0.29 +0.7 18,606 - SMc02775 0.29 -0.6 18,611 + SMc02775 0.29 +0.0 18,611 + SMc02775 0.29 +0.6 18,612 - SMc02775 0.29 -0.3 18,641 + SMc02775 0.32 +0.4 18,641 + SMc02775 0.32 -0.4 18,641 + SMc02775 0.32 +0.6 18,641 + SMc02775 0.32 -0.1 18,642 - SMc02775 0.32 -0.3 18,642 - SMc02775 0.32 -1.4 18,642 - SMc02775 0.32 -0.3 18,647 + SMc02775 0.33 -0.4 18,653 + SMc02775 0.33 -1.3 18,687 - SMc02775 0.37 +0.1 18,722 + SMc02775 0.40 +1.8 18,723 - SMc02775 0.40 +0.4 18,773 + SMc02775 0.45 +0.3 18,773 + SMc02775 0.45 +0.7 19,064 + SMc02775 0.74 -0.2 19,114 + SMc02775 0.78 -0.8 19,289 - +0.9 19,289 - +1.0 19,369 + -0.2 19,369 + -1.5 19,370 - +0.2 19,450 - +0.9 19,876 - SMc02774 0.44 -0.0 19,945 + SMc02774 0.51 -1.4 20,016 - SMc02774 0.58 -1.3 20,045 + SMc02774 0.61 -0.8 20,045 + SMc02774 0.61 -1.1 20,045 + SMc02774 0.61 +0.1 20,046 - SMc02774 0.61 +0.4 20,292 - SMc02774 0.86 -1.1 20,292 - SMc02774 0.86 +0.1 20,292 - SMc02774 0.86 -1.2 20,292 - SMc02774 0.86 -0.1 20,354 - -1.1 20,383 + -0.5 20,384 - +2.9 20,384 - +0.3 20,547 + +0.3 21,200 + SMc02773 0.42 +0.0 21,201 - SMc02773 0.42 +1.7 21,201 - SMc02773 0.42 -0.5 21,351 - SMc02773 0.52 +0.6 21,426 + SMc02773 0.57 +0.1 21,426 + SMc02773 0.57 -0.4 21,427 - SMc02773 0.57 +0.2 21,427 - SMc02773 0.57 +0.5 21,427 - SMc02773 0.57 -0.4 21,427 - SMc02773 0.57 +0.6 21,427 - SMc02773 0.57 +1.0
Or see this region's nucleotide sequence