Strain Fitness in Pseudomonas sp. S08-1 around OH686_22235

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_22230 and OH686_22235 overlap by 4 nucleotidesOH686_22235 and OH686_22240 overlap by 1 nucleotides OH686_22230: OH686_22230 - Aerotolerance protein BatD, at 4,521,899 to 4,523,527 _22230 OH686_22235: OH686_22235 - Aerotolerance protein BatB / Aerotolerance protein BatC, at 4,523,524 to 4,525,320 _22235 OH686_22240: OH686_22240 - Aerotolerance protein BatA, at 4,525,320 to 4,526,339 _22240 Position (kb) 4523 4524 4525 4526Strain fitness (log2 ratio) -2 -1 0 1 2at 4522.845 kb on + strand, within OH686_22230at 4522.845 kb on + strand, within OH686_22230at 4522.845 kb on + strand, within OH686_22230at 4522.845 kb on + strand, within OH686_22230at 4522.845 kb on + strand, within OH686_22230at 4522.845 kb on + strand, within OH686_22230at 4522.846 kb on - strand, within OH686_22230at 4522.846 kb on - strand, within OH686_22230at 4522.846 kb on - strand, within OH686_22230at 4522.846 kb on - strand, within OH686_22230at 4522.846 kb on - strand, within OH686_22230at 4522.846 kb on - strand, within OH686_22230at 4523.049 kb on + strand, within OH686_22230at 4523.050 kb on - strand, within OH686_22230at 4523.050 kb on - strand, within OH686_22230at 4523.067 kb on + strand, within OH686_22230at 4523.067 kb on + strand, within OH686_22230at 4523.067 kb on + strand, within OH686_22230at 4523.067 kb on + strand, within OH686_22230at 4523.067 kb on + strand, within OH686_22230at 4523.067 kb on + strand, within OH686_22230at 4523.067 kb on + strand, within OH686_22230at 4523.067 kb on + strand, within OH686_22230at 4523.067 kb on + strand, within OH686_22230at 4523.067 kb on + strand, within OH686_22230at 4523.067 kb on + strand, within OH686_22230at 4523.067 kb on + strand, within OH686_22230at 4523.067 kb on + strand, within OH686_22230at 4523.068 kb on - strand, within OH686_22230at 4523.068 kb on - strand, within OH686_22230at 4523.068 kb on - strand, within OH686_22230at 4523.068 kb on - strand, within OH686_22230at 4523.068 kb on - strand, within OH686_22230at 4523.068 kb on - strand, within OH686_22230at 4523.068 kb on - strand, within OH686_22230at 4523.068 kb on - strand, within OH686_22230at 4523.068 kb on - strand, within OH686_22230at 4523.068 kb on - strand, within OH686_22230at 4523.068 kb on - strand, within OH686_22230at 4523.075 kb on + strand, within OH686_22230at 4523.076 kb on - strand, within OH686_22230at 4523.103 kb on + strand, within OH686_22230at 4523.103 kb on + strand, within OH686_22230at 4523.103 kb on + strand, within OH686_22230at 4523.103 kb on + strand, within OH686_22230at 4523.103 kb on + strand, within OH686_22230at 4523.104 kb on - strand, within OH686_22230at 4523.104 kb on - strand, within OH686_22230at 4523.104 kb on - strand, within OH686_22230at 4523.104 kb on - strand, within OH686_22230at 4523.104 kb on - strand, within OH686_22230at 4523.241 kb on + strand, within OH686_22230at 4523.241 kb on + strand, within OH686_22230at 4523.242 kb on - strand, within OH686_22230at 4523.242 kb on - strand, within OH686_22230at 4523.558 kb on + strandat 4523.558 kb on + strandat 4523.559 kb on - strandat 4523.559 kb on - strandat 4524.041 kb on + strand, within OH686_22235at 4524.041 kb on + strand, within OH686_22235at 4524.098 kb on + strand, within OH686_22235at 4524.098 kb on + strand, within OH686_22235at 4524.098 kb on + strand, within OH686_22235at 4524.098 kb on + strand, within OH686_22235at 4524.099 kb on - strand, within OH686_22235at 4524.099 kb on - strand, within OH686_22235at 4524.099 kb on - strand, within OH686_22235at 4524.099 kb on - strand, within OH686_22235at 4524.099 kb on - strand, within OH686_22235at 4524.149 kb on + strand, within OH686_22235at 4524.149 kb on + strand, within OH686_22235at 4524.149 kb on + strand, within OH686_22235at 4524.149 kb on + strand, within OH686_22235at 4524.150 kb on - strand, within OH686_22235at 4524.150 kb on - strand, within OH686_22235at 4524.150 kb on - strand, within OH686_22235at 4524.290 kb on + strand, within OH686_22235at 4524.290 kb on + strand, within OH686_22235at 4524.905 kb on + strand, within OH686_22235at 4524.905 kb on + strand, within OH686_22235at 4524.906 kb on - strand, within OH686_22235at 4524.906 kb on - strand, within OH686_22235at 4524.906 kb on - strand, within OH686_22235at 4524.906 kb on - strand, within OH686_22235at 4525.429 kb on + strand, within OH686_22240at 4525.429 kb on + strand, within OH686_22240at 4525.429 kb on + strand, within OH686_22240at 4525.429 kb on + strand, within OH686_22240at 4525.429 kb on + strand, within OH686_22240at 4525.429 kb on + strand, within OH686_22240at 4525.429 kb on + strand, within OH686_22240at 4525.429 kb on + strand, within OH686_22240at 4525.429 kb on + strand, within OH686_22240at 4525.430 kb on - strand, within OH686_22240at 4525.430 kb on - strand, within OH686_22240at 4525.430 kb on - strand, within OH686_22240at 4525.430 kb on - strand, within OH686_22240at 4525.430 kb on - strand, within OH686_22240at 4525.537 kb on + strand, within OH686_22240at 4525.537 kb on + strand, within OH686_22240at 4525.537 kb on + strand, within OH686_22240at 4525.537 kb on + strand, within OH686_22240at 4525.538 kb on - strand, within OH686_22240at 4525.538 kb on - strand, within OH686_22240at 4525.538 kb on - strand, within OH686_22240at 4525.538 kb on - strand, within OH686_22240at 4525.660 kb on + strand, within OH686_22240at 4525.660 kb on + strand, within OH686_22240at 4525.660 kb on + strand, within OH686_22240at 4525.660 kb on + strand, within OH686_22240at 4525.660 kb on + strand, within OH686_22240at 4525.660 kb on + strand, within OH686_22240at 4525.660 kb on + strand, within OH686_22240at 4525.660 kb on + strand, within OH686_22240at 4525.661 kb on - strand, within OH686_22240at 4525.904 kb on - strand, within OH686_22240at 4525.904 kb on - strand, within OH686_22240

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,522,845 + OH686_22230 0.58 +2.3
4,522,845 + OH686_22230 0.58 +2.0
4,522,845 + OH686_22230 0.58 +0.4
4,522,845 + OH686_22230 0.58 -0.3
4,522,845 + OH686_22230 0.58 +0.8
4,522,845 + OH686_22230 0.58 -0.0
4,522,846 - OH686_22230 0.58 +1.0
4,522,846 - OH686_22230 0.58 -0.1
4,522,846 - OH686_22230 0.58 +1.4
4,522,846 - OH686_22230 0.58 -0.2
4,522,846 - OH686_22230 0.58 +0.7
4,522,846 - OH686_22230 0.58 +0.6
4,523,049 + OH686_22230 0.71 +0.1
4,523,050 - OH686_22230 0.71 -0.6
4,523,050 - OH686_22230 0.71 -0.7
4,523,067 + OH686_22230 0.72 +0.8
4,523,067 + OH686_22230 0.72 -0.1
4,523,067 + OH686_22230 0.72 -1.2
4,523,067 + OH686_22230 0.72 +0.5
4,523,067 + OH686_22230 0.72 +0.8
4,523,067 + OH686_22230 0.72 +1.3
4,523,067 + OH686_22230 0.72 +0.7
4,523,067 + OH686_22230 0.72 +0.6
4,523,067 + OH686_22230 0.72 -0.3
4,523,067 + OH686_22230 0.72 +0.2
4,523,067 + OH686_22230 0.72 +0.3
4,523,067 + OH686_22230 0.72 +0.7
4,523,067 + OH686_22230 0.72 +2.0
4,523,068 - OH686_22230 0.72 +0.9
4,523,068 - OH686_22230 0.72 +0.5
4,523,068 - OH686_22230 0.72 -0.5
4,523,068 - OH686_22230 0.72 +0.5
4,523,068 - OH686_22230 0.72 -1.6
4,523,068 - OH686_22230 0.72 +0.3
4,523,068 - OH686_22230 0.72 +0.9
4,523,068 - OH686_22230 0.72 +0.5
4,523,068 - OH686_22230 0.72 +0.0
4,523,068 - OH686_22230 0.72 -0.3
4,523,068 - OH686_22230 0.72 +0.1
4,523,075 + OH686_22230 0.72 +0.9
4,523,076 - OH686_22230 0.72 -0.5
4,523,103 + OH686_22230 0.74 -0.9
4,523,103 + OH686_22230 0.74 +0.8
4,523,103 + OH686_22230 0.74 +2.0
4,523,103 + OH686_22230 0.74 -2.2
4,523,103 + OH686_22230 0.74 -0.6
4,523,104 - OH686_22230 0.74 -0.2
4,523,104 - OH686_22230 0.74 +1.3
4,523,104 - OH686_22230 0.74 +1.0
4,523,104 - OH686_22230 0.74 +0.4
4,523,104 - OH686_22230 0.74 -0.5
4,523,241 + OH686_22230 0.82 +0.8
4,523,241 + OH686_22230 0.82 -0.7
4,523,242 - OH686_22230 0.82 -0.2
4,523,242 - OH686_22230 0.82 +0.9
4,523,558 + +0.9
4,523,558 + +0.3
4,523,559 - +0.4
4,523,559 - -1.3
4,524,041 + OH686_22235 0.29 +0.2
4,524,041 + OH686_22235 0.29 +1.7
4,524,098 + OH686_22235 0.32 +0.3
4,524,098 + OH686_22235 0.32 +0.7
4,524,098 + OH686_22235 0.32 -0.7
4,524,098 + OH686_22235 0.32 -0.4
4,524,099 - OH686_22235 0.32 -0.1
4,524,099 - OH686_22235 0.32 +1.7
4,524,099 - OH686_22235 0.32 +0.3
4,524,099 - OH686_22235 0.32 +1.3
4,524,099 - OH686_22235 0.32 +0.4
4,524,149 + OH686_22235 0.35 +1.2
4,524,149 + OH686_22235 0.35 -0.6
4,524,149 + OH686_22235 0.35 +0.4
4,524,149 + OH686_22235 0.35 +0.3
4,524,150 - OH686_22235 0.35 -0.8
4,524,150 - OH686_22235 0.35 -0.6
4,524,150 - OH686_22235 0.35 -0.5
4,524,290 + OH686_22235 0.43 +0.0
4,524,290 + OH686_22235 0.43 +0.1
4,524,905 + OH686_22235 0.77 +0.9
4,524,905 + OH686_22235 0.77 +0.3
4,524,906 - OH686_22235 0.77 +0.0
4,524,906 - OH686_22235 0.77 +1.5
4,524,906 - OH686_22235 0.77 -0.7
4,524,906 - OH686_22235 0.77 +1.0
4,525,429 + OH686_22240 0.11 +0.7
4,525,429 + OH686_22240 0.11 -0.3
4,525,429 + OH686_22240 0.11 -0.2
4,525,429 + OH686_22240 0.11 +1.3
4,525,429 + OH686_22240 0.11 -0.8
4,525,429 + OH686_22240 0.11 +2.0
4,525,429 + OH686_22240 0.11 +1.2
4,525,429 + OH686_22240 0.11 +0.0
4,525,429 + OH686_22240 0.11 +0.2
4,525,430 - OH686_22240 0.11 -0.2
4,525,430 - OH686_22240 0.11 +0.4
4,525,430 - OH686_22240 0.11 +1.3
4,525,430 - OH686_22240 0.11 +0.4
4,525,430 - OH686_22240 0.11 -0.9
4,525,537 + OH686_22240 0.21 -0.6
4,525,537 + OH686_22240 0.21 +1.4
4,525,537 + OH686_22240 0.21 +0.3
4,525,537 + OH686_22240 0.21 -1.4
4,525,538 - OH686_22240 0.21 +1.1
4,525,538 - OH686_22240 0.21 +0.9
4,525,538 - OH686_22240 0.21 -0.4
4,525,538 - OH686_22240 0.21 +1.2
4,525,660 + OH686_22240 0.33 -0.5
4,525,660 + OH686_22240 0.33 -0.1
4,525,660 + OH686_22240 0.33 +1.0
4,525,660 + OH686_22240 0.33 +0.0
4,525,660 + OH686_22240 0.33 +0.0
4,525,660 + OH686_22240 0.33 +1.6
4,525,660 + OH686_22240 0.33 +1.3
4,525,660 + OH686_22240 0.33 -0.2
4,525,661 - OH686_22240 0.33 +0.7
4,525,904 - OH686_22240 0.57 -0.6
4,525,904 - OH686_22240 0.57 +0.0

Or see this region's nucleotide sequence