Strain Fitness in Pseudomonas sp. S08-1 around OH686_13925

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_13915 and OH686_13920 are separated by 121 nucleotidesOH686_13920 and OH686_13925 are separated by 185 nucleotidesOH686_13925 and OH686_13930 are separated by 64 nucleotidesOH686_13930 and OH686_13935 are separated by 116 nucleotides OH686_13915: OH686_13915 - Uncharacterized protein EC-HemY in Proteobacteria (unrelated to HemY-type PPO in GramPositives), at 2,912,191 to 2,913,423 _13915 OH686_13920: OH686_13920 - Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation, at 2,913,545 to 2,914,036 _13920 OH686_13925: OH686_13925 - Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD, at 2,914,222 to 2,914,698 _13925 OH686_13930: OH686_13930 - hypothetical protein, at 2,914,763 to 2,915,401 _13930 OH686_13935: OH686_13935 - Alginate regulatory protein AlgP, positive transcriptional regulator of AlgD, at 2,915,518 to 2,916,696 _13935 Position (kb) 2914 2915Strain fitness (log2 ratio) -2 -1 0 1 2at 2913.259 kb on + strand, within OH686_13915at 2913.259 kb on + strand, within OH686_13915at 2913.260 kb on - strand, within OH686_13915at 2913.421 kb on + strandat 2913.421 kb on + strandat 2913.422 kb on - strandat 2913.507 kb on + strandat 2913.512 kb on + strandat 2913.512 kb on + strandat 2913.512 kb on + strandat 2913.570 kb on + strandat 2913.570 kb on + strandat 2913.571 kb on - strandat 2913.620 kb on + strand, within OH686_13920at 2913.620 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.749 kb on + strand, within OH686_13920at 2913.750 kb on - strand, within OH686_13920at 2913.750 kb on - strand, within OH686_13920at 2914.091 kb on + strandat 2914.092 kb on - strandat 2914.092 kb on - strandat 2914.092 kb on - strandat 2914.103 kb on - strandat 2914.165 kb on + strandat 2914.165 kb on + strandat 2914.165 kb on + strandat 2914.166 kb on - strandat 2914.186 kb on + strandat 2914.186 kb on + strandat 2914.186 kb on + strandat 2914.186 kb on + strandat 2914.186 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.265 kb on + strandat 2914.266 kb on - strandat 2914.266 kb on - strandat 2914.266 kb on - strandat 2914.266 kb on - strandat 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.399 kb on + strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.400 kb on - strand, within OH686_13925at 2914.426 kb on + strand, within OH686_13925at 2914.426 kb on + strand, within OH686_13925at 2914.426 kb on + strand, within OH686_13925at 2914.426 kb on + strand, within OH686_13925at 2914.426 kb on + strand, within OH686_13925at 2914.427 kb on - strand, within OH686_13925at 2914.427 kb on - strand, within OH686_13925at 2914.427 kb on - strand, within OH686_13925at 2914.495 kb on + strand, within OH686_13925at 2914.495 kb on + strand, within OH686_13925at 2914.495 kb on + strand, within OH686_13925at 2914.496 kb on - strand, within OH686_13925at 2914.496 kb on - strand, within OH686_13925at 2914.496 kb on - strand, within OH686_13925at 2914.845 kb on + strand, within OH686_13930at 2914.845 kb on + strand, within OH686_13930at 2914.845 kb on + strand, within OH686_13930at 2914.845 kb on + strand, within OH686_13930at 2914.845 kb on + strand, within OH686_13930at 2914.846 kb on - strand, within OH686_13930at 2914.846 kb on - strand, within OH686_13930at 2914.846 kb on - strand, within OH686_13930at 2914.846 kb on - strand, within OH686_13930at 2914.846 kb on - strand, within OH686_13930at 2914.998 kb on + strand, within OH686_13930at 2914.999 kb on - strand, within OH686_13930at 2914.999 kb on - strand, within OH686_13930at 2915.051 kb on + strand, within OH686_13930at 2915.051 kb on + strand, within OH686_13930at 2915.051 kb on + strand, within OH686_13930at 2915.051 kb on + strand, within OH686_13930at 2915.051 kb on + strand, within OH686_13930at 2915.051 kb on + strand, within OH686_13930at 2915.051 kb on + strand, within OH686_13930at 2915.051 kb on + strand, within OH686_13930at 2915.051 kb on + strand, within OH686_13930at 2915.051 kb on + strand, within OH686_13930at 2915.051 kb on + strand, within OH686_13930at 2915.051 kb on + strand, within OH686_13930at 2915.051 kb on + strand, within OH686_13930at 2915.052 kb on - strand, within OH686_13930at 2915.052 kb on - strand, within OH686_13930at 2915.052 kb on - strand, within OH686_13930at 2915.052 kb on - strand, within OH686_13930at 2915.052 kb on - strand, within OH686_13930at 2915.052 kb on - strand, within OH686_13930at 2915.066 kb on + strand, within OH686_13930at 2915.066 kb on + strand, within OH686_13930at 2915.066 kb on + strand, within OH686_13930at 2915.067 kb on - strand, within OH686_13930at 2915.067 kb on - strand, within OH686_13930at 2915.067 kb on - strand, within OH686_13930at 2915.067 kb on - strand, within OH686_13930at 2915.067 kb on - strand, within OH686_13930at 2915.270 kb on + strand, within OH686_13930at 2915.270 kb on + strand, within OH686_13930at 2915.271 kb on - strand, within OH686_13930at 2915.271 kb on - strand, within OH686_13930at 2915.271 kb on - strand, within OH686_13930at 2915.322 kb on + strand, within OH686_13930at 2915.322 kb on + strand, within OH686_13930at 2915.322 kb on + strand, within OH686_13930at 2915.322 kb on + strand, within OH686_13930at 2915.322 kb on + strand, within OH686_13930at 2915.322 kb on + strand, within OH686_13930at 2915.322 kb on + strand, within OH686_13930at 2915.323 kb on - strand, within OH686_13930at 2915.323 kb on - strand, within OH686_13930at 2915.433 kb on + strandat 2915.433 kb on + strandat 2915.434 kb on - strandat 2915.434 kb on - strandat 2915.480 kb on + strandat 2915.480 kb on + strandat 2915.480 kb on + strandat 2915.480 kb on + strandat 2915.481 kb on - strandat 2915.481 kb on - strandat 2915.481 kb on - strandat 2915.481 kb on - strandat 2915.481 kb on - strandat 2915.481 kb on - strandat 2915.483 kb on + strandat 2915.484 kb on - strandat 2915.532 kb on + strandat 2915.532 kb on + strandat 2915.532 kb on + strandat 2915.532 kb on + strandat 2915.532 kb on + strandat 2915.532 kb on + strandat 2915.532 kb on + strandat 2915.532 kb on + strandat 2915.532 kb on + strandat 2915.533 kb on - strandat 2915.533 kb on - strandat 2915.533 kb on - strandat 2915.533 kb on - strandat 2915.533 kb on - strandat 2915.533 kb on - strandat 2915.533 kb on - strandat 2915.533 kb on - strandat 2915.533 kb on - strandat 2915.533 kb on - strandat 2915.533 kb on - strandat 2915.533 kb on - strandat 2915.533 kb on - strandat 2915.533 kb on - strandat 2915.533 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,913,259 + OH686_13915 0.87 +0.0
2,913,259 + OH686_13915 0.87 -0.3
2,913,260 - OH686_13915 0.87 -1.2
2,913,421 + +1.3
2,913,421 + +0.0
2,913,422 - -0.6
2,913,507 + -0.8
2,913,512 + -0.1
2,913,512 + +0.4
2,913,512 + -1.3
2,913,570 + +1.3
2,913,570 + -0.9
2,913,571 - -0.2
2,913,620 + OH686_13920 0.15 +0.3
2,913,620 + OH686_13920 0.15 +0.1
2,913,749 + OH686_13920 0.41 +0.4
2,913,749 + OH686_13920 0.41 +0.6
2,913,749 + OH686_13920 0.41 +0.0
2,913,749 + OH686_13920 0.41 -1.5
2,913,749 + OH686_13920 0.41 -0.5
2,913,749 + OH686_13920 0.41 +0.3
2,913,749 + OH686_13920 0.41 -0.2
2,913,749 + OH686_13920 0.41 +0.1
2,913,750 - OH686_13920 0.42 +0.2
2,913,750 - OH686_13920 0.42 +0.1
2,914,091 + +0.3
2,914,092 - +1.1
2,914,092 - +0.2
2,914,092 - -0.0
2,914,103 - -0.2
2,914,165 + -0.7
2,914,165 + +0.0
2,914,165 + -1.8
2,914,166 - -0.8
2,914,186 + -0.3
2,914,186 + -0.9
2,914,186 + -0.6
2,914,186 + -0.9
2,914,186 + -0.2
2,914,265 + +1.5
2,914,265 + +0.8
2,914,265 + +0.8
2,914,265 + -0.6
2,914,265 + +1.1
2,914,265 + +0.9
2,914,265 + +0.9
2,914,265 + +1.0
2,914,265 + +1.4
2,914,265 + -0.5
2,914,265 + +0.2
2,914,265 + -0.1
2,914,265 + +0.0
2,914,266 - -0.8
2,914,266 - +0.1
2,914,266 - +1.0
2,914,266 - +0.3
2,914,399 + OH686_13925 0.37 +1.0
2,914,399 + OH686_13925 0.37 +0.8
2,914,399 + OH686_13925 0.37 +1.3
2,914,399 + OH686_13925 0.37 -0.1
2,914,399 + OH686_13925 0.37 -0.5
2,914,399 + OH686_13925 0.37 +1.1
2,914,399 + OH686_13925 0.37 +0.9
2,914,399 + OH686_13925 0.37 +1.3
2,914,399 + OH686_13925 0.37 -0.6
2,914,399 + OH686_13925 0.37 +0.1
2,914,399 + OH686_13925 0.37 +0.8
2,914,399 + OH686_13925 0.37 +1.0
2,914,399 + OH686_13925 0.37 +2.4
2,914,399 + OH686_13925 0.37 +0.6
2,914,399 + OH686_13925 0.37 -0.1
2,914,399 + OH686_13925 0.37 +0.4
2,914,399 + OH686_13925 0.37 +0.4
2,914,399 + OH686_13925 0.37 +0.7
2,914,399 + OH686_13925 0.37 -0.2
2,914,400 - OH686_13925 0.37 -0.1
2,914,400 - OH686_13925 0.37 -0.5
2,914,400 - OH686_13925 0.37 -1.9
2,914,400 - OH686_13925 0.37 +0.2
2,914,400 - OH686_13925 0.37 +0.3
2,914,400 - OH686_13925 0.37 +0.4
2,914,400 - OH686_13925 0.37 +0.5
2,914,400 - OH686_13925 0.37 +0.1
2,914,400 - OH686_13925 0.37 -0.1
2,914,400 - OH686_13925 0.37 +0.3
2,914,400 - OH686_13925 0.37 +0.0
2,914,400 - OH686_13925 0.37 +0.4
2,914,400 - OH686_13925 0.37 +0.6
2,914,400 - OH686_13925 0.37 +1.6
2,914,400 - OH686_13925 0.37 +0.8
2,914,400 - OH686_13925 0.37 +0.8
2,914,400 - OH686_13925 0.37 -0.3
2,914,400 - OH686_13925 0.37 +0.1
2,914,400 - OH686_13925 0.37 -0.0
2,914,426 + OH686_13925 0.43 +0.6
2,914,426 + OH686_13925 0.43 +0.7
2,914,426 + OH686_13925 0.43 +1.0
2,914,426 + OH686_13925 0.43 +0.6
2,914,426 + OH686_13925 0.43 +0.0
2,914,427 - OH686_13925 0.43 +0.8
2,914,427 - OH686_13925 0.43 -0.2
2,914,427 - OH686_13925 0.43 +1.3
2,914,495 + OH686_13925 0.57 +0.1
2,914,495 + OH686_13925 0.57 +0.5
2,914,495 + OH686_13925 0.57 +0.0
2,914,496 - OH686_13925 0.57 -1.0
2,914,496 - OH686_13925 0.57 +1.0
2,914,496 - OH686_13925 0.57 -1.0
2,914,845 + OH686_13930 0.13 -0.8
2,914,845 + OH686_13930 0.13 +0.7
2,914,845 + OH686_13930 0.13 -0.4
2,914,845 + OH686_13930 0.13 -0.3
2,914,845 + OH686_13930 0.13 -0.2
2,914,846 - OH686_13930 0.13 -0.1
2,914,846 - OH686_13930 0.13 -0.9
2,914,846 - OH686_13930 0.13 +0.4
2,914,846 - OH686_13930 0.13 +0.9
2,914,846 - OH686_13930 0.13 -1.1
2,914,998 + OH686_13930 0.37 -0.6
2,914,999 - OH686_13930 0.37 +1.3
2,914,999 - OH686_13930 0.37 -0.2
2,915,051 + OH686_13930 0.45 +0.7
2,915,051 + OH686_13930 0.45 +0.1
2,915,051 + OH686_13930 0.45 -1.4
2,915,051 + OH686_13930 0.45 -1.3
2,915,051 + OH686_13930 0.45 +0.4
2,915,051 + OH686_13930 0.45 +1.5
2,915,051 + OH686_13930 0.45 -0.4
2,915,051 + OH686_13930 0.45 -0.2
2,915,051 + OH686_13930 0.45 -0.5
2,915,051 + OH686_13930 0.45 -0.4
2,915,051 + OH686_13930 0.45 -2.2
2,915,051 + OH686_13930 0.45 -0.4
2,915,051 + OH686_13930 0.45 +0.3
2,915,052 - OH686_13930 0.45 -0.2
2,915,052 - OH686_13930 0.45 +0.1
2,915,052 - OH686_13930 0.45 +1.1
2,915,052 - OH686_13930 0.45 -0.4
2,915,052 - OH686_13930 0.45 +1.2
2,915,052 - OH686_13930 0.45 +0.1
2,915,066 + OH686_13930 0.47 +0.1
2,915,066 + OH686_13930 0.47 -0.2
2,915,066 + OH686_13930 0.47 -0.9
2,915,067 - OH686_13930 0.48 +0.6
2,915,067 - OH686_13930 0.48 -1.9
2,915,067 - OH686_13930 0.48 -0.5
2,915,067 - OH686_13930 0.48 -0.6
2,915,067 - OH686_13930 0.48 -0.4
2,915,270 + OH686_13930 0.79 +0.1
2,915,270 + OH686_13930 0.79 +0.1
2,915,271 - OH686_13930 0.79 -0.9
2,915,271 - OH686_13930 0.79 -0.5
2,915,271 - OH686_13930 0.79 +0.9
2,915,322 + OH686_13930 0.87 -1.3
2,915,322 + OH686_13930 0.87 +0.9
2,915,322 + OH686_13930 0.87 -1.5
2,915,322 + OH686_13930 0.87 -0.2
2,915,322 + OH686_13930 0.87 -0.7
2,915,322 + OH686_13930 0.87 -0.4
2,915,322 + OH686_13930 0.87 +0.9
2,915,323 - OH686_13930 0.88 +0.6
2,915,323 - OH686_13930 0.88 +0.1
2,915,433 + +0.1
2,915,433 + +1.2
2,915,434 - +0.9
2,915,434 - +0.7
2,915,480 + +0.1
2,915,480 + -0.7
2,915,480 + +0.8
2,915,480 + +0.4
2,915,481 - +0.0
2,915,481 - -0.6
2,915,481 - +0.1
2,915,481 - +1.0
2,915,481 - +0.6
2,915,481 - +0.6
2,915,483 + +0.6
2,915,484 - -0.3
2,915,532 + -0.1
2,915,532 + +0.3
2,915,532 + -0.6
2,915,532 + +0.1
2,915,532 + +0.7
2,915,532 + +0.9
2,915,532 + -0.3
2,915,532 + -1.0
2,915,532 + -1.2
2,915,533 - +0.1
2,915,533 - +1.6
2,915,533 - -0.5
2,915,533 - -1.6
2,915,533 - -0.2
2,915,533 - +0.1
2,915,533 - -0.3
2,915,533 - +0.1
2,915,533 - +0.0
2,915,533 - +0.1
2,915,533 - -0.3
2,915,533 - -0.1
2,915,533 - +0.2
2,915,533 - +0.3
2,915,533 - +0.8

Or see this region's nucleotide sequence