Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3497 and EX28DRAFT_3498 are separated by 125 nucleotides EX28DRAFT_3498 and EX28DRAFT_3499 are separated by 30 nucleotides
EX28DRAFT_3497: EX28DRAFT_3497 - hypothetical protein, at 159,747 to 160,988
_3497
EX28DRAFT_3498: EX28DRAFT_3498 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 161,114 to 161,935
_3498
EX28DRAFT_3499: EX28DRAFT_3499 - Arabinose efflux permease, at 161,966 to 163,585
_3499
Position (kb) 161
162 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 160.241 kb on - strand, within EX28DRAFT_3497 at 160.364 kb on + strand, within EX28DRAFT_3497 at 160.485 kb on + strand, within EX28DRAFT_3497 at 160.511 kb on + strand, within EX28DRAFT_3497 at 160.511 kb on + strand, within EX28DRAFT_3497 at 160.512 kb on - strand, within EX28DRAFT_3497 at 160.512 kb on - strand, within EX28DRAFT_3497 at 160.545 kb on + strand, within EX28DRAFT_3497 at 160.569 kb on + strand, within EX28DRAFT_3497 at 160.570 kb on - strand, within EX28DRAFT_3497 at 160.791 kb on + strand, within EX28DRAFT_3497 at 160.885 kb on + strand at 160.896 kb on - strand at 160.991 kb on + strand at 160.991 kb on + strand at 160.992 kb on - strand at 160.992 kb on - strand at 160.992 kb on - strand at 161.022 kb on + strand at 161.022 kb on + strand at 161.045 kb on + strand at 161.045 kb on + strand at 161.046 kb on - strand at 161.116 kb on - strand at 161.783 kb on + strand, within EX28DRAFT_3498 at 161.812 kb on - strand, within EX28DRAFT_3498 at 161.812 kb on - strand, within EX28DRAFT_3498 at 161.812 kb on - strand, within EX28DRAFT_3498 at 161.895 kb on + strand at 161.899 kb on - strand at 161.935 kb on + strand at 161.935 kb on + strand at 161.936 kb on - strand at 161.936 kb on - strand at 161.936 kb on - strand at 161.936 kb on - strand at 161.967 kb on + strand at 162.144 kb on + strand, within EX28DRAFT_3499 at 162.145 kb on - strand, within EX28DRAFT_3499 at 162.240 kb on + strand, within EX28DRAFT_3499 at 162.240 kb on + strand, within EX28DRAFT_3499 at 162.241 kb on - strand, within EX28DRAFT_3499 at 162.756 kb on - strand, within EX28DRAFT_3499 at 162.892 kb on - strand, within EX28DRAFT_3499
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 160,241 - EX28DRAFT_3497 0.40 +0.1 160,364 + EX28DRAFT_3497 0.50 -1.2 160,485 + EX28DRAFT_3497 0.59 +0.0 160,511 + EX28DRAFT_3497 0.62 +0.5 160,511 + EX28DRAFT_3497 0.62 +0.5 160,512 - EX28DRAFT_3497 0.62 +0.3 160,512 - EX28DRAFT_3497 0.62 -0.5 160,545 + EX28DRAFT_3497 0.64 -0.6 160,569 + EX28DRAFT_3497 0.66 +0.4 160,570 - EX28DRAFT_3497 0.66 -1.1 160,791 + EX28DRAFT_3497 0.84 +0.2 160,885 + -0.6 160,896 - -0.2 160,991 + -0.4 160,991 + -0.1 160,992 - +1.3 160,992 - +0.2 160,992 - -1.4 161,022 + +0.4 161,022 + +0.5 161,045 + -0.2 161,045 + +0.8 161,046 - -0.9 161,116 - +0.1 161,783 + EX28DRAFT_3498 0.81 -0.1 161,812 - EX28DRAFT_3498 0.85 -1.6 161,812 - EX28DRAFT_3498 0.85 +4.7 161,812 - EX28DRAFT_3498 0.85 +1.5 161,895 + +0.3 161,899 - +0.4 161,935 + +0.8 161,935 + +0.1 161,936 - +1.6 161,936 - -0.5 161,936 - -1.5 161,936 - -0.4 161,967 + +0.6 162,144 + EX28DRAFT_3499 0.11 -0.1 162,145 - EX28DRAFT_3499 0.11 -0.1 162,240 + EX28DRAFT_3499 0.17 -0.1 162,240 + EX28DRAFT_3499 0.17 -0.9 162,241 - EX28DRAFT_3499 0.17 +0.1 162,756 - EX28DRAFT_3499 0.49 +0.1 162,892 - EX28DRAFT_3499 0.57 +0.5
Or see this region's nucleotide sequence