Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2728

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2726 and EX28DRAFT_2727 are separated by 68 nucleotidesEX28DRAFT_2727 and EX28DRAFT_2728 overlap by 9 nucleotidesEX28DRAFT_2728 and EX28DRAFT_2729 overlap by 4 nucleotidesEX28DRAFT_2729 and EX28DRAFT_2730 overlap by 41 nucleotides EX28DRAFT_2726: EX28DRAFT_2726 - Cupin domain, at 28,268 to 28,612 _2726 EX28DRAFT_2727: EX28DRAFT_2727 - Uncharacterized conserved protein, at 28,681 to 29,238 _2727 EX28DRAFT_2728: EX28DRAFT_2728 - hypothetical protein, at 29,230 to 30,021 _2728 EX28DRAFT_2729: EX28DRAFT_2729 - RNA polymerase sigma factor, sigma-70 family, at 30,018 to 30,596 _2729 EX28DRAFT_2730: EX28DRAFT_2730 - TPR repeat, at 30,556 to 31,083 _2730 Position (kb) 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 28.243 kb on - strandat 28.243 kb on - strandat 28.243 kb on - strandat 28.317 kb on + strand, within EX28DRAFT_2726at 28.317 kb on + strand, within EX28DRAFT_2726at 28.318 kb on - strand, within EX28DRAFT_2726at 28.430 kb on - strand, within EX28DRAFT_2726at 28.617 kb on + strandat 28.665 kb on + strandat 28.697 kb on + strandat 28.698 kb on - strandat 28.701 kb on - strandat 28.701 kb on - strandat 28.748 kb on - strand, within EX28DRAFT_2727at 28.748 kb on - strand, within EX28DRAFT_2727at 28.751 kb on + strand, within EX28DRAFT_2727at 28.752 kb on - strand, within EX28DRAFT_2727at 28.752 kb on - strand, within EX28DRAFT_2727at 28.752 kb on - strand, within EX28DRAFT_2727at 28.910 kb on + strand, within EX28DRAFT_2727at 29.163 kb on + strand, within EX28DRAFT_2727at 29.233 kb on + strandat 29.251 kb on + strandat 29.251 kb on + strandat 29.312 kb on + strand, within EX28DRAFT_2728at 29.389 kb on + strand, within EX28DRAFT_2728at 29.400 kb on + strand, within EX28DRAFT_2728at 29.401 kb on - strand, within EX28DRAFT_2728at 29.401 kb on - strand, within EX28DRAFT_2728at 29.465 kb on + strand, within EX28DRAFT_2728at 29.616 kb on - strand, within EX28DRAFT_2728at 29.616 kb on - strand, within EX28DRAFT_2728at 29.625 kb on + strand, within EX28DRAFT_2728at 29.625 kb on + strand, within EX28DRAFT_2728at 29.625 kb on + strand, within EX28DRAFT_2728at 29.626 kb on - strand, within EX28DRAFT_2728at 29.626 kb on - strand, within EX28DRAFT_2728at 29.626 kb on - strand, within EX28DRAFT_2728at 29.626 kb on - strand, within EX28DRAFT_2728at 29.626 kb on - strand, within EX28DRAFT_2728at 29.627 kb on + strand, within EX28DRAFT_2728at 29.627 kb on + strand, within EX28DRAFT_2728at 29.627 kb on + strand, within EX28DRAFT_2728at 29.628 kb on - strand, within EX28DRAFT_2728at 29.628 kb on - strand, within EX28DRAFT_2728at 29.628 kb on - strand, within EX28DRAFT_2728at 29.628 kb on - strand, within EX28DRAFT_2728at 29.659 kb on - strand, within EX28DRAFT_2728at 29.659 kb on - strand, within EX28DRAFT_2728at 29.659 kb on - strand, within EX28DRAFT_2728at 29.694 kb on - strand, within EX28DRAFT_2728at 29.966 kb on - strandat 29.966 kb on - strandat 29.966 kb on - strandat 30.224 kb on + strand, within EX28DRAFT_2729at 30.224 kb on + strand, within EX28DRAFT_2729at 30.224 kb on + strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.226 kb on + strand, within EX28DRAFT_2729at 30.226 kb on + strand, within EX28DRAFT_2729at 30.226 kb on + strand, within EX28DRAFT_2729at 30.227 kb on - strand, within EX28DRAFT_2729at 30.227 kb on - strand, within EX28DRAFT_2729at 30.338 kb on + strand, within EX28DRAFT_2729at 30.884 kb on + strand, within EX28DRAFT_2730at 30.885 kb on - strand, within EX28DRAFT_2730at 30.885 kb on - strand, within EX28DRAFT_2730at 30.890 kb on + strand, within EX28DRAFT_2730at 30.890 kb on + strand, within EX28DRAFT_2730at 30.890 kb on + strand, within EX28DRAFT_2730at 30.891 kb on - strand, within EX28DRAFT_2730at 30.891 kb on - strand, within EX28DRAFT_2730at 30.959 kb on + strand, within EX28DRAFT_2730at 30.959 kb on + strand, within EX28DRAFT_2730at 30.959 kb on + strand, within EX28DRAFT_2730at 30.960 kb on - strand, within EX28DRAFT_2730at 31.002 kb on + strand, within EX28DRAFT_2730at 31.002 kb on + strand, within EX28DRAFT_2730at 31.002 kb on + strand, within EX28DRAFT_2730at 31.002 kb on + strand, within EX28DRAFT_2730at 31.003 kb on - strand, within EX28DRAFT_2730at 31.006 kb on - strand, within EX28DRAFT_2730

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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28,243 - +0.5
28,243 - -0.2
28,243 - +0.8
28,317 + EX28DRAFT_2726 0.14 +0.4
28,317 + EX28DRAFT_2726 0.14 -0.4
28,318 - EX28DRAFT_2726 0.14 +0.5
28,430 - EX28DRAFT_2726 0.47 -2.8
28,617 + -0.9
28,665 + -0.1
28,697 + +0.4
28,698 - -0.9
28,701 - +0.4
28,701 - -0.5
28,748 - EX28DRAFT_2727 0.12 +0.9
28,748 - EX28DRAFT_2727 0.12 +0.3
28,751 + EX28DRAFT_2727 0.13 -0.3
28,752 - EX28DRAFT_2727 0.13 +0.5
28,752 - EX28DRAFT_2727 0.13 +1.0
28,752 - EX28DRAFT_2727 0.13 +0.3
28,910 + EX28DRAFT_2727 0.41 +2.1
29,163 + EX28DRAFT_2727 0.86 -1.7
29,233 + +0.3
29,251 + +0.6
29,251 + +0.4
29,312 + EX28DRAFT_2728 0.10 -0.3
29,389 + EX28DRAFT_2728 0.20 +1.0
29,400 + EX28DRAFT_2728 0.21 +0.4
29,401 - EX28DRAFT_2728 0.22 -0.4
29,401 - EX28DRAFT_2728 0.22 +0.5
29,465 + EX28DRAFT_2728 0.30 -0.0
29,616 - EX28DRAFT_2728 0.49 +0.3
29,616 - EX28DRAFT_2728 0.49 +1.1
29,625 + EX28DRAFT_2728 0.50 -0.4
29,625 + EX28DRAFT_2728 0.50 -0.9
29,625 + EX28DRAFT_2728 0.50 -1.2
29,626 - EX28DRAFT_2728 0.50 -0.4
29,626 - EX28DRAFT_2728 0.50 +0.5
29,626 - EX28DRAFT_2728 0.50 +0.9
29,626 - EX28DRAFT_2728 0.50 -0.3
29,626 - EX28DRAFT_2728 0.50 +1.7
29,627 + EX28DRAFT_2728 0.50 -0.2
29,627 + EX28DRAFT_2728 0.50 -0.5
29,627 + EX28DRAFT_2728 0.50 +0.7
29,628 - EX28DRAFT_2728 0.50 +0.7
29,628 - EX28DRAFT_2728 0.50 +0.9
29,628 - EX28DRAFT_2728 0.50 -0.2
29,628 - EX28DRAFT_2728 0.50 +0.8
29,659 - EX28DRAFT_2728 0.54 -1.3
29,659 - EX28DRAFT_2728 0.54 +0.6
29,659 - EX28DRAFT_2728 0.54 +0.4
29,694 - EX28DRAFT_2728 0.59 -0.1
29,966 - +0.0
29,966 - +0.4
29,966 - -0.2
30,224 + EX28DRAFT_2729 0.36 +0.5
30,224 + EX28DRAFT_2729 0.36 +0.3
30,224 + EX28DRAFT_2729 0.36 +0.3
30,225 - EX28DRAFT_2729 0.36 -1.4
30,225 - EX28DRAFT_2729 0.36 -1.0
30,225 - EX28DRAFT_2729 0.36 +0.1
30,225 - EX28DRAFT_2729 0.36 -0.1
30,225 - EX28DRAFT_2729 0.36 -0.8
30,225 - EX28DRAFT_2729 0.36 +0.2
30,225 - EX28DRAFT_2729 0.36 -0.1
30,226 + EX28DRAFT_2729 0.36 +0.9
30,226 + EX28DRAFT_2729 0.36 +0.5
30,226 + EX28DRAFT_2729 0.36 +1.3
30,227 - EX28DRAFT_2729 0.36 -1.5
30,227 - EX28DRAFT_2729 0.36 -0.5
30,338 + EX28DRAFT_2729 0.55 -0.9
30,884 + EX28DRAFT_2730 0.62 -1.1
30,885 - EX28DRAFT_2730 0.62 -0.1
30,885 - EX28DRAFT_2730 0.62 +0.3
30,890 + EX28DRAFT_2730 0.63 -0.3
30,890 + EX28DRAFT_2730 0.63 -0.3
30,890 + EX28DRAFT_2730 0.63 +0.0
30,891 - EX28DRAFT_2730 0.63 +0.2
30,891 - EX28DRAFT_2730 0.63 -0.5
30,959 + EX28DRAFT_2730 0.76 -0.3
30,959 + EX28DRAFT_2730 0.76 +1.4
30,959 + EX28DRAFT_2730 0.76 +0.5
30,960 - EX28DRAFT_2730 0.77 +0.7
31,002 + EX28DRAFT_2730 0.84 +0.3
31,002 + EX28DRAFT_2730 0.84 -0.3
31,002 + EX28DRAFT_2730 0.84 -0.2
31,002 + EX28DRAFT_2730 0.84 -0.8
31,003 - EX28DRAFT_2730 0.85 -1.0
31,006 - EX28DRAFT_2730 0.85 +1.7

Or see this region's nucleotide sequence