Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1750 and EX28DRAFT_1751 overlap by 4 nucleotides EX28DRAFT_1751 and EX28DRAFT_1752 overlap by 4 nucleotides
EX28DRAFT_1750: EX28DRAFT_1750 - succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), at 1,764,559 to 1,766,046
_1750
EX28DRAFT_1751: EX28DRAFT_1751 - arginine N-succinyltransferase, at 1,766,043 to 1,767,077
_1751
EX28DRAFT_1752: EX28DRAFT_1752 - transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family, at 1,767,074 to 1,768,294
_1752
Position (kb) 1766
1767
1768 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1765.503 kb on + strand, within EX28DRAFT_1750 at 1765.557 kb on + strand, within EX28DRAFT_1750 at 1765.712 kb on + strand, within EX28DRAFT_1750 at 1765.782 kb on + strand, within EX28DRAFT_1750 at 1766.039 kb on - strand at 1766.039 kb on - strand at 1766.100 kb on - strand at 1766.189 kb on - strand, within EX28DRAFT_1751 at 1766.332 kb on + strand, within EX28DRAFT_1751 at 1766.333 kb on - strand, within EX28DRAFT_1751 at 1766.440 kb on + strand, within EX28DRAFT_1751 at 1766.441 kb on - strand, within EX28DRAFT_1751 at 1766.441 kb on - strand, within EX28DRAFT_1751 at 1766.441 kb on - strand, within EX28DRAFT_1751 at 1766.441 kb on - strand, within EX28DRAFT_1751 at 1766.444 kb on + strand, within EX28DRAFT_1751 at 1766.444 kb on + strand, within EX28DRAFT_1751 at 1766.444 kb on + strand, within EX28DRAFT_1751 at 1766.445 kb on - strand, within EX28DRAFT_1751 at 1766.500 kb on + strand, within EX28DRAFT_1751 at 1766.564 kb on - strand, within EX28DRAFT_1751 at 1766.637 kb on - strand, within EX28DRAFT_1751 at 1766.642 kb on + strand, within EX28DRAFT_1751 at 1766.642 kb on + strand, within EX28DRAFT_1751 at 1766.666 kb on - strand, within EX28DRAFT_1751 at 1766.767 kb on + strand, within EX28DRAFT_1751 at 1766.767 kb on + strand, within EX28DRAFT_1751 at 1767.180 kb on - strand at 1767.180 kb on - strand at 1767.235 kb on + strand, within EX28DRAFT_1752 at 1767.242 kb on - strand, within EX28DRAFT_1752 at 1767.580 kb on + strand, within EX28DRAFT_1752 at 1767.580 kb on + strand, within EX28DRAFT_1752 at 1767.582 kb on + strand, within EX28DRAFT_1752 at 1767.582 kb on + strand, within EX28DRAFT_1752 at 1767.582 kb on + strand, within EX28DRAFT_1752 at 1767.583 kb on - strand, within EX28DRAFT_1752 at 1767.583 kb on - strand, within EX28DRAFT_1752 at 1767.583 kb on - strand, within EX28DRAFT_1752 at 1767.588 kb on + strand, within EX28DRAFT_1752 at 1767.589 kb on - strand, within EX28DRAFT_1752 at 1767.786 kb on + strand, within EX28DRAFT_1752 at 1767.835 kb on - strand, within EX28DRAFT_1752 at 1767.989 kb on - strand, within EX28DRAFT_1752
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,765,503 + EX28DRAFT_1750 0.63 -0.3 1,765,557 + EX28DRAFT_1750 0.67 +0.1 1,765,712 + EX28DRAFT_1750 0.77 +0.1 1,765,782 + EX28DRAFT_1750 0.82 +0.9 1,766,039 - +1.2 1,766,039 - +0.5 1,766,100 - +0.0 1,766,189 - EX28DRAFT_1751 0.14 +0.1 1,766,332 + EX28DRAFT_1751 0.28 -0.9 1,766,333 - EX28DRAFT_1751 0.28 +1.1 1,766,440 + EX28DRAFT_1751 0.38 +0.9 1,766,441 - EX28DRAFT_1751 0.38 +0.5 1,766,441 - EX28DRAFT_1751 0.38 -0.1 1,766,441 - EX28DRAFT_1751 0.38 -1.1 1,766,441 - EX28DRAFT_1751 0.38 +0.0 1,766,444 + EX28DRAFT_1751 0.39 -0.6 1,766,444 + EX28DRAFT_1751 0.39 +0.3 1,766,444 + EX28DRAFT_1751 0.39 -1.3 1,766,445 - EX28DRAFT_1751 0.39 +1.3 1,766,500 + EX28DRAFT_1751 0.44 +0.2 1,766,564 - EX28DRAFT_1751 0.50 -4.2 1,766,637 - EX28DRAFT_1751 0.57 +0.9 1,766,642 + EX28DRAFT_1751 0.58 +0.9 1,766,642 + EX28DRAFT_1751 0.58 -0.0 1,766,666 - EX28DRAFT_1751 0.60 +0.5 1,766,767 + EX28DRAFT_1751 0.70 +0.4 1,766,767 + EX28DRAFT_1751 0.70 +0.8 1,767,180 - -0.3 1,767,180 - +0.2 1,767,235 + EX28DRAFT_1752 0.13 +2.0 1,767,242 - EX28DRAFT_1752 0.14 -0.2 1,767,580 + EX28DRAFT_1752 0.41 +0.3 1,767,580 + EX28DRAFT_1752 0.41 -0.2 1,767,582 + EX28DRAFT_1752 0.42 -0.0 1,767,582 + EX28DRAFT_1752 0.42 -0.1 1,767,582 + EX28DRAFT_1752 0.42 +0.3 1,767,583 - EX28DRAFT_1752 0.42 +0.0 1,767,583 - EX28DRAFT_1752 0.42 +1.7 1,767,583 - EX28DRAFT_1752 0.42 -0.4 1,767,588 + EX28DRAFT_1752 0.42 +1.2 1,767,589 - EX28DRAFT_1752 0.42 -0.1 1,767,786 + EX28DRAFT_1752 0.58 +0.1 1,767,835 - EX28DRAFT_1752 0.62 +0.3 1,767,989 - EX28DRAFT_1752 0.75 -1.6
Or see this region's nucleotide sequence