Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0745

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0744 and EX28DRAFT_0745 are separated by 130 nucleotidesEX28DRAFT_0745 and EX28DRAFT_0746 are separated by 184 nucleotidesEX28DRAFT_0746 and EX28DRAFT_0747 are separated by 6 nucleotides EX28DRAFT_0744: EX28DRAFT_0744 - FOG: EAL domain, at 741,575 to 743,173 _0744 EX28DRAFT_0745: EX28DRAFT_0745 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 743,304 to 744,668 _0745 EX28DRAFT_0746: EX28DRAFT_0746 - NUDIX domain, at 744,853 to 745,431 _0746 EX28DRAFT_0747: EX28DRAFT_0747 - aminodeoxychorismate synthase, component I, bacterial clade, at 745,438 to 746,772 _0747 Position (kb) 743 744 745Strain fitness (log2 ratio) -3 -2 -1 0 1at 742.366 kb on + strand, within EX28DRAFT_0744at 742.367 kb on - strand, within EX28DRAFT_0744at 742.467 kb on - strand, within EX28DRAFT_0744at 742.738 kb on + strand, within EX28DRAFT_0744at 742.744 kb on + strand, within EX28DRAFT_0744at 742.745 kb on - strand, within EX28DRAFT_0744at 743.068 kb on + strandat 743.082 kb on - strandat 743.143 kb on - strandat 743.222 kb on - strandat 743.302 kb on + strandat 743.305 kb on + strandat 743.306 kb on - strandat 743.322 kb on - strandat 743.384 kb on - strandat 743.384 kb on - strandat 743.387 kb on + strandat 743.388 kb on - strandat 743.388 kb on - strandat 743.445 kb on - strand, within EX28DRAFT_0745at 743.544 kb on - strand, within EX28DRAFT_0745at 743.693 kb on - strand, within EX28DRAFT_0745at 743.734 kb on + strand, within EX28DRAFT_0745at 743.735 kb on - strand, within EX28DRAFT_0745at 743.760 kb on - strand, within EX28DRAFT_0745at 743.771 kb on - strand, within EX28DRAFT_0745at 743.771 kb on - strand, within EX28DRAFT_0745at 743.934 kb on - strand, within EX28DRAFT_0745at 744.130 kb on + strand, within EX28DRAFT_0745at 744.238 kb on + strand, within EX28DRAFT_0745at 744.239 kb on - strand, within EX28DRAFT_0745at 744.242 kb on - strand, within EX28DRAFT_0745at 744.254 kb on - strand, within EX28DRAFT_0745at 744.274 kb on + strand, within EX28DRAFT_0745at 744.275 kb on - strand, within EX28DRAFT_0745at 744.432 kb on - strand, within EX28DRAFT_0745at 744.435 kb on + strand, within EX28DRAFT_0745at 744.450 kb on - strand, within EX28DRAFT_0745at 744.467 kb on + strand, within EX28DRAFT_0745at 744.471 kb on - strand, within EX28DRAFT_0745at 744.659 kb on + strandat 744.659 kb on + strandat 744.659 kb on + strandat 744.659 kb on + strandat 744.660 kb on - strandat 744.660 kb on - strandat 744.660 kb on - strandat 744.660 kb on - strandat 744.660 kb on - strandat 744.663 kb on - strandat 744.712 kb on + strandat 744.712 kb on + strandat 744.713 kb on - strandat 744.714 kb on + strandat 744.714 kb on + strandat 744.715 kb on - strandat 744.724 kb on + strandat 744.725 kb on - strandat 744.729 kb on + strandat 744.729 kb on + strandat 744.730 kb on - strandat 744.843 kb on + strandat 744.848 kb on + strandat 744.849 kb on - strandat 744.849 kb on - strandat 744.920 kb on + strand, within EX28DRAFT_0746at 744.921 kb on - strand, within EX28DRAFT_0746at 745.058 kb on + strand, within EX28DRAFT_0746at 745.077 kb on + strand, within EX28DRAFT_0746at 745.264 kb on - strand, within EX28DRAFT_0746at 745.268 kb on - strand, within EX28DRAFT_0746at 745.268 kb on - strand, within EX28DRAFT_0746at 745.378 kb on + strandat 745.378 kb on + strandat 745.470 kb on + strandat 745.488 kb on - strandat 745.611 kb on - strand, within EX28DRAFT_0747

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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742,366 + EX28DRAFT_0744 0.49 -2.0
742,367 - EX28DRAFT_0744 0.50 +0.0
742,467 - EX28DRAFT_0744 0.56 +0.2
742,738 + EX28DRAFT_0744 0.73 -0.4
742,744 + EX28DRAFT_0744 0.73 -0.1
742,745 - EX28DRAFT_0744 0.73 -0.4
743,068 + +0.8
743,082 - -0.6
743,143 - +0.3
743,222 - -0.0
743,302 + -0.2
743,305 + -0.2
743,306 - -0.2
743,322 - +0.3
743,384 - +0.4
743,384 - -0.5
743,387 + +0.3
743,388 - -0.2
743,388 - +0.6
743,445 - EX28DRAFT_0745 0.10 -0.8
743,544 - EX28DRAFT_0745 0.18 -0.5
743,693 - EX28DRAFT_0745 0.28 -0.7
743,734 + EX28DRAFT_0745 0.32 -1.2
743,735 - EX28DRAFT_0745 0.32 +0.4
743,760 - EX28DRAFT_0745 0.33 +0.0
743,771 - EX28DRAFT_0745 0.34 -0.1
743,771 - EX28DRAFT_0745 0.34 -0.2
743,934 - EX28DRAFT_0745 0.46 -0.1
744,130 + EX28DRAFT_0745 0.61 -0.0
744,238 + EX28DRAFT_0745 0.68 -0.1
744,239 - EX28DRAFT_0745 0.68 -0.5
744,242 - EX28DRAFT_0745 0.69 +0.4
744,254 - EX28DRAFT_0745 0.70 +0.4
744,274 + EX28DRAFT_0745 0.71 -0.7
744,275 - EX28DRAFT_0745 0.71 -1.7
744,432 - EX28DRAFT_0745 0.83 +0.1
744,435 + EX28DRAFT_0745 0.83 +0.2
744,450 - EX28DRAFT_0745 0.84 -0.2
744,467 + EX28DRAFT_0745 0.85 +1.1
744,471 - EX28DRAFT_0745 0.85 -1.0
744,659 + +0.4
744,659 + +0.2
744,659 + -0.7
744,659 + -0.4
744,660 - +0.2
744,660 - -0.0
744,660 - -0.1
744,660 - -0.2
744,660 - +0.1
744,663 - -0.4
744,712 + +1.1
744,712 + -3.3
744,713 - -0.1
744,714 + -0.0
744,714 + +0.2
744,715 - -0.1
744,724 + +1.6
744,725 - -0.1
744,729 + +0.2
744,729 + +0.5
744,730 - +0.7
744,843 + +0.4
744,848 + -0.8
744,849 - +0.5
744,849 - -0.2
744,920 + EX28DRAFT_0746 0.12 +0.6
744,921 - EX28DRAFT_0746 0.12 +0.5
745,058 + EX28DRAFT_0746 0.35 +0.3
745,077 + EX28DRAFT_0746 0.39 +1.1
745,264 - EX28DRAFT_0746 0.71 -1.0
745,268 - EX28DRAFT_0746 0.72 +1.2
745,268 - EX28DRAFT_0746 0.72 +0.2
745,378 + -0.5
745,378 + +0.1
745,470 + -2.2
745,488 - +0.5
745,611 - EX28DRAFT_0747 0.13 -0.2

Or see this region's nucleotide sequence