Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16820 and ABID97_RS16825 overlap by 4 nucleotides ABID97_RS16825 and ABID97_RS16830 are separated by 179 nucleotides ABID97_RS16830 and ABID97_RS16835 are separated by 17 nucleotides ABID97_RS16835 and ABID97_RS16840 are separated by 113 nucleotides
ABID97_RS16820: ABID97_RS16820 - DUF1109 domain-containing protein, at 3,479,079 to 3,479,720
_RS16820
ABID97_RS16825: ABID97_RS16825 - sigma-70 family RNA polymerase sigma factor, at 3,479,717 to 3,480,298
_RS16825
ABID97_RS16830: ABID97_RS16830 - hypothetical protein, at 3,480,478 to 3,480,897
_RS16830
ABID97_RS16835: ABID97_RS16835 - DUF6152 family protein, at 3,480,915 to 3,481,385
_RS16835
ABID97_RS16840: ABID97_RS16840 - GTP cyclohydrolase II, at 3,481,499 to 3,482,845
_RS16840
Position (kb)
3480
3481 Strain fitness (log2 ratio)
-1
0
1 at 3479.588 kb on - strand, within ABID97_RS16820 at 3480.018 kb on + strand, within ABID97_RS16825 at 3480.019 kb on - strand, within ABID97_RS16825 at 3480.066 kb on + strand, within ABID97_RS16825 at 3480.067 kb on - strand, within ABID97_RS16825 at 3480.070 kb on + strand, within ABID97_RS16825 at 3480.070 kb on + strand, within ABID97_RS16825 at 3480.071 kb on - strand, within ABID97_RS16825 at 3480.071 kb on - strand, within ABID97_RS16825 at 3480.511 kb on + strand at 3480.890 kb on - strand at 3481.335 kb on + strand, within ABID97_RS16835 at 3481.336 kb on - strand, within ABID97_RS16835 at 3481.360 kb on - strand at 3481.473 kb on + strand at 3481.473 kb on + strand at 3481.474 kb on - strand at 3481.474 kb on - strand at 3481.474 kb on - strand at 3481.763 kb on + strand, within ABID97_RS16840 at 3481.763 kb on + strand, within ABID97_RS16840 at 3481.764 kb on - strand, within ABID97_RS16840 at 3481.772 kb on + strand, within ABID97_RS16840 at 3481.773 kb on - strand, within ABID97_RS16840 at 3481.773 kb on - strand, within ABID97_RS16840
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 3,479,588 - ABID97_RS16820 0.79 -0.5 3,480,018 + ABID97_RS16825 0.52 +0.2 3,480,019 - ABID97_RS16825 0.52 +0.3 3,480,066 + ABID97_RS16825 0.60 +0.7 3,480,067 - ABID97_RS16825 0.60 +0.2 3,480,070 + ABID97_RS16825 0.61 -0.2 3,480,070 + ABID97_RS16825 0.61 +0.7 3,480,071 - ABID97_RS16825 0.61 +0.2 3,480,071 - ABID97_RS16825 0.61 -0.4 3,480,511 + +0.3 3,480,890 - +0.3 3,481,335 + ABID97_RS16835 0.89 -0.0 3,481,336 - ABID97_RS16835 0.89 -0.1 3,481,360 - +0.3 3,481,473 + -0.1 3,481,473 + -0.9 3,481,474 - -0.3 3,481,474 - -1.1 3,481,474 - -0.1 3,481,763 + ABID97_RS16840 0.20 -0.0 3,481,763 + ABID97_RS16840 0.20 -0.2 3,481,764 - ABID97_RS16840 0.20 +0.0 3,481,772 + ABID97_RS16840 0.20 -1.0 3,481,773 - ABID97_RS16840 0.20 +0.2 3,481,773 - ABID97_RS16840 0.20 +0.3
Or see this region's nucleotide sequence