Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16830

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16820 and ABID97_RS16825 overlap by 4 nucleotidesABID97_RS16825 and ABID97_RS16830 are separated by 179 nucleotidesABID97_RS16830 and ABID97_RS16835 are separated by 17 nucleotidesABID97_RS16835 and ABID97_RS16840 are separated by 113 nucleotides ABID97_RS16820: ABID97_RS16820 - DUF1109 domain-containing protein, at 3,479,079 to 3,479,720 _RS16820 ABID97_RS16825: ABID97_RS16825 - sigma-70 family RNA polymerase sigma factor, at 3,479,717 to 3,480,298 _RS16825 ABID97_RS16830: ABID97_RS16830 - hypothetical protein, at 3,480,478 to 3,480,897 _RS16830 ABID97_RS16835: ABID97_RS16835 - DUF6152 family protein, at 3,480,915 to 3,481,385 _RS16835 ABID97_RS16840: ABID97_RS16840 - GTP cyclohydrolase II, at 3,481,499 to 3,482,845 _RS16840 Position (kb) 3480 3481Strain fitness (log2 ratio) -1 0 1at 3479.588 kb on - strand, within ABID97_RS16820at 3480.018 kb on + strand, within ABID97_RS16825at 3480.019 kb on - strand, within ABID97_RS16825at 3480.066 kb on + strand, within ABID97_RS16825at 3480.067 kb on - strand, within ABID97_RS16825at 3480.070 kb on + strand, within ABID97_RS16825at 3480.070 kb on + strand, within ABID97_RS16825at 3480.071 kb on - strand, within ABID97_RS16825at 3480.071 kb on - strand, within ABID97_RS16825at 3480.511 kb on + strandat 3480.890 kb on - strandat 3481.335 kb on + strand, within ABID97_RS16835at 3481.336 kb on - strand, within ABID97_RS16835at 3481.360 kb on - strandat 3481.473 kb on + strandat 3481.473 kb on + strandat 3481.474 kb on - strandat 3481.474 kb on - strandat 3481.474 kb on - strandat 3481.763 kb on + strand, within ABID97_RS16840at 3481.763 kb on + strand, within ABID97_RS16840at 3481.764 kb on - strand, within ABID97_RS16840at 3481.772 kb on + strand, within ABID97_RS16840at 3481.773 kb on - strand, within ABID97_RS16840at 3481.773 kb on - strand, within ABID97_RS16840

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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3,479,588 - ABID97_RS16820 0.79 -0.5
3,480,018 + ABID97_RS16825 0.52 +0.2
3,480,019 - ABID97_RS16825 0.52 +0.3
3,480,066 + ABID97_RS16825 0.60 +0.7
3,480,067 - ABID97_RS16825 0.60 +0.2
3,480,070 + ABID97_RS16825 0.61 -0.2
3,480,070 + ABID97_RS16825 0.61 +0.7
3,480,071 - ABID97_RS16825 0.61 +0.2
3,480,071 - ABID97_RS16825 0.61 -0.4
3,480,511 + +0.3
3,480,890 - +0.3
3,481,335 + ABID97_RS16835 0.89 -0.0
3,481,336 - ABID97_RS16835 0.89 -0.1
3,481,360 - +0.3
3,481,473 + -0.1
3,481,473 + -0.9
3,481,474 - -0.3
3,481,474 - -1.1
3,481,474 - -0.1
3,481,763 + ABID97_RS16840 0.20 -0.0
3,481,763 + ABID97_RS16840 0.20 -0.2
3,481,764 - ABID97_RS16840 0.20 +0.0
3,481,772 + ABID97_RS16840 0.20 -1.0
3,481,773 - ABID97_RS16840 0.20 +0.2
3,481,773 - ABID97_RS16840 0.20 +0.3

Or see this region's nucleotide sequence