Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4249 and EX28DRAFT_4250 are separated by 217 nucleotides EX28DRAFT_4250 and EX28DRAFT_4251 are separated by 206 nucleotides EX28DRAFT_4251 and EX28DRAFT_4252 are separated by 75 nucleotides
EX28DRAFT_4249: EX28DRAFT_4249 - HAD superfamily (subfamily IIIB) phosphatase, TIGR01672, at 56,294 to 57,007
_4249
EX28DRAFT_4250: EX28DRAFT_4250 - Aspartate/tyrosine/aromatic aminotransferase, at 57,225 to 58,418
_4250
EX28DRAFT_4251: EX28DRAFT_4251 - Protein of unknown function (DUF2589), at 58,625 to 59,182
_4251
EX28DRAFT_4252: EX28DRAFT_4252 - Protein of unknown function (DUF2589), at 59,258 to 59,860
_4252
Position (kb) 57
58
59 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 56.265 kb on - strand at 56.295 kb on + strand at 56.298 kb on + strand at 56.298 kb on + strand at 56.375 kb on + strand, within EX28DRAFT_4249 at 56.376 kb on - strand, within EX28DRAFT_4249 at 56.376 kb on - strand, within EX28DRAFT_4249 at 56.444 kb on + strand, within EX28DRAFT_4249 at 56.445 kb on - strand, within EX28DRAFT_4249 at 56.445 kb on - strand, within EX28DRAFT_4249 at 56.445 kb on - strand, within EX28DRAFT_4249 at 56.518 kb on + strand, within EX28DRAFT_4249 at 56.607 kb on + strand, within EX28DRAFT_4249 at 56.607 kb on + strand, within EX28DRAFT_4249 at 56.607 kb on + strand, within EX28DRAFT_4249 at 56.608 kb on - strand, within EX28DRAFT_4249 at 56.641 kb on + strand, within EX28DRAFT_4249 at 56.725 kb on - strand, within EX28DRAFT_4249 at 56.745 kb on + strand, within EX28DRAFT_4249 at 56.746 kb on - strand, within EX28DRAFT_4249 at 56.956 kb on + strand at 56.957 kb on - strand at 56.969 kb on + strand at 56.969 kb on + strand at 56.970 kb on - strand at 57.050 kb on + strand at 57.227 kb on - strand at 57.293 kb on + strand at 57.294 kb on - strand at 57.294 kb on - strand at 57.367 kb on + strand, within EX28DRAFT_4250 at 57.408 kb on - strand, within EX28DRAFT_4250 at 57.484 kb on - strand, within EX28DRAFT_4250 at 57.484 kb on - strand, within EX28DRAFT_4250 at 57.568 kb on + strand, within EX28DRAFT_4250 at 57.775 kb on + strand, within EX28DRAFT_4250 at 57.816 kb on + strand, within EX28DRAFT_4250 at 57.817 kb on - strand, within EX28DRAFT_4250 at 58.066 kb on + strand, within EX28DRAFT_4250 at 58.067 kb on - strand, within EX28DRAFT_4250 at 58.223 kb on - strand, within EX28DRAFT_4250 at 58.293 kb on - strand, within EX28DRAFT_4250 at 58.309 kb on + strand at 58.309 kb on + strand at 58.313 kb on - strand at 58.313 kb on - strand at 58.325 kb on + strand at 58.325 kb on + strand at 58.383 kb on - strand at 58.461 kb on + strand at 58.462 kb on - strand at 58.462 kb on - strand at 58.514 kb on - strand at 58.552 kb on - strand at 58.640 kb on - strand at 58.651 kb on + strand at 58.675 kb on + strand at 58.676 kb on - strand at 58.676 kb on - strand at 58.676 kb on - strand at 58.676 kb on - strand at 58.733 kb on + strand, within EX28DRAFT_4251 at 58.831 kb on + strand, within EX28DRAFT_4251 at 59.066 kb on - strand, within EX28DRAFT_4251 at 59.089 kb on + strand, within EX28DRAFT_4251 at 59.098 kb on + strand, within EX28DRAFT_4251 at 59.141 kb on + strand at 59.141 kb on + strand at 59.141 kb on + strand at 59.142 kb on - strand at 59.200 kb on + strand at 59.200 kb on + strand at 59.200 kb on + strand at 59.201 kb on - strand at 59.408 kb on - strand, within EX28DRAFT_4252 at 59.408 kb on - strand, within EX28DRAFT_4252
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 56,265 - -0.6 56,295 + -0.7 56,298 + +0.3 56,298 + -0.9 56,375 + EX28DRAFT_4249 0.11 +0.0 56,376 - EX28DRAFT_4249 0.11 +0.6 56,376 - EX28DRAFT_4249 0.11 -0.0 56,444 + EX28DRAFT_4249 0.21 -0.2 56,445 - EX28DRAFT_4249 0.21 +0.0 56,445 - EX28DRAFT_4249 0.21 +0.2 56,445 - EX28DRAFT_4249 0.21 -1.4 56,518 + EX28DRAFT_4249 0.31 +0.5 56,607 + EX28DRAFT_4249 0.44 +0.0 56,607 + EX28DRAFT_4249 0.44 +0.7 56,607 + EX28DRAFT_4249 0.44 -0.4 56,608 - EX28DRAFT_4249 0.44 -0.0 56,641 + EX28DRAFT_4249 0.49 -0.6 56,725 - EX28DRAFT_4249 0.60 -0.0 56,745 + EX28DRAFT_4249 0.63 +1.1 56,746 - EX28DRAFT_4249 0.63 -0.3 56,956 + -0.2 56,957 - +0.6 56,969 + -0.2 56,969 + +0.2 56,970 - +0.3 57,050 + +0.3 57,227 - +0.6 57,293 + -1.2 57,294 - -1.7 57,294 - -0.2 57,367 + EX28DRAFT_4250 0.12 -0.3 57,408 - EX28DRAFT_4250 0.15 -0.8 57,484 - EX28DRAFT_4250 0.22 +0.6 57,484 - EX28DRAFT_4250 0.22 -0.3 57,568 + EX28DRAFT_4250 0.29 -0.8 57,775 + EX28DRAFT_4250 0.46 -1.7 57,816 + EX28DRAFT_4250 0.49 -0.4 57,817 - EX28DRAFT_4250 0.50 +0.1 58,066 + EX28DRAFT_4250 0.70 -0.6 58,067 - EX28DRAFT_4250 0.71 -0.8 58,223 - EX28DRAFT_4250 0.84 -0.8 58,293 - EX28DRAFT_4250 0.89 -3.9 58,309 + -0.9 58,309 + +1.1 58,313 - -1.0 58,313 - +0.6 58,325 + -1.6 58,325 + -0.8 58,383 - -0.2 58,461 + -0.8 58,462 - +0.3 58,462 - -0.6 58,514 - -0.2 58,552 - -0.2 58,640 - -0.7 58,651 + +0.0 58,675 + -2.7 58,676 - +1.6 58,676 - +0.2 58,676 - -0.3 58,676 - +0.1 58,733 + EX28DRAFT_4251 0.19 +0.3 58,831 + EX28DRAFT_4251 0.37 +0.4 59,066 - EX28DRAFT_4251 0.79 +0.8 59,089 + EX28DRAFT_4251 0.83 -0.3 59,098 + EX28DRAFT_4251 0.85 +0.1 59,141 + +0.4 59,141 + +0.8 59,141 + +0.6 59,142 - -0.0 59,200 + +0.4 59,200 + +0.0 59,200 + +0.1 59,201 - +1.0 59,408 - EX28DRAFT_4252 0.25 +0.4 59,408 - EX28DRAFT_4252 0.25 -0.6
Or see this region's nucleotide sequence