Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4122 and EX28DRAFT_4123 are separated by 16 nucleotides EX28DRAFT_4123 and EX28DRAFT_4124 are separated by 62 nucleotides EX28DRAFT_4124 and EX28DRAFT_4125 are separated by 585 nucleotides
EX28DRAFT_4122: EX28DRAFT_4122 - rhomboid family protease GlpG, at 97,701 to 98,531
_4122
EX28DRAFT_4123: EX28DRAFT_4123 - transcriptional regulator, DeoR family, at 98,548 to 99,306
_4123
EX28DRAFT_4124: EX28DRAFT_4124 - ATP-dependent transcriptional regulator, at 99,369 to 102,074
_4124
EX28DRAFT_4125: EX28DRAFT_4125 - glycogen/starch/alpha-glucan phosphorylases, at 102,660 to 105,053
_4125
Position (kb)
99
100
101
102
103 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 98.370 kb on + strand, within EX28DRAFT_4122 at 98.371 kb on - strand, within EX28DRAFT_4122 at 98.387 kb on - strand, within EX28DRAFT_4122 at 98.387 kb on - strand, within EX28DRAFT_4122 at 98.444 kb on + strand, within EX28DRAFT_4122 at 98.529 kb on + strand at 98.529 kb on + strand at 98.602 kb on + strand at 98.836 kb on - strand, within EX28DRAFT_4123 at 99.133 kb on - strand, within EX28DRAFT_4123 at 99.279 kb on + strand at 99.524 kb on - strand at 99.532 kb on + strand at 99.863 kb on - strand, within EX28DRAFT_4124 at 99.963 kb on + strand, within EX28DRAFT_4124 at 100.028 kb on + strand, within EX28DRAFT_4124 at 100.100 kb on - strand, within EX28DRAFT_4124 at 100.140 kb on - strand, within EX28DRAFT_4124 at 101.116 kb on + strand, within EX28DRAFT_4124 at 101.314 kb on + strand, within EX28DRAFT_4124 at 101.687 kb on - strand, within EX28DRAFT_4124 at 101.704 kb on + strand, within EX28DRAFT_4124 at 101.705 kb on - strand, within EX28DRAFT_4124 at 101.830 kb on - strand at 101.845 kb on + strand at 101.846 kb on - strand at 101.846 kb on - strand at 101.984 kb on + strand at 101.985 kb on - strand at 102.029 kb on + strand at 102.029 kb on + strand at 102.030 kb on - strand at 102.030 kb on - strand at 102.074 kb on + strand at 102.074 kb on + strand at 102.074 kb on + strand at 102.075 kb on - strand at 102.139 kb on - strand at 102.140 kb on + strand at 102.140 kb on + strand at 102.141 kb on - strand at 102.141 kb on - strand at 102.141 kb on - strand at 102.141 kb on - strand at 102.141 kb on - strand at 102.141 kb on - strand at 102.162 kb on + strand at 102.162 kb on + strand at 102.162 kb on + strand at 102.163 kb on - strand at 102.320 kb on + strand at 102.320 kb on + strand at 102.321 kb on - strand at 102.321 kb on - strand at 102.365 kb on + strand at 102.368 kb on + strand at 102.368 kb on + strand at 102.368 kb on + strand at 102.491 kb on - strand at 102.512 kb on + strand at 102.512 kb on + strand at 102.512 kb on + strand at 102.512 kb on + strand at 102.543 kb on + strand at 102.617 kb on + strand at 102.672 kb on - strand at 102.824 kb on + strand at 102.849 kb on + strand at 102.849 kb on + strand at 102.849 kb on + strand at 102.849 kb on + strand at 102.849 kb on + strand at 102.849 kb on + strand at 102.849 kb on + strand at 102.850 kb on - strand at 102.850 kb on - strand at 102.850 kb on - strand at 102.850 kb on - strand at 102.913 kb on - strand, within EX28DRAFT_4125 at 102.950 kb on + strand, within EX28DRAFT_4125 at 102.950 kb on + strand, within EX28DRAFT_4125 at 102.951 kb on - strand, within EX28DRAFT_4125 at 103.037 kb on + strand, within EX28DRAFT_4125
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 98,370 + EX28DRAFT_4122 0.81 +0.5 98,371 - EX28DRAFT_4122 0.81 -1.0 98,387 - EX28DRAFT_4122 0.83 -0.8 98,387 - EX28DRAFT_4122 0.83 -0.3 98,444 + EX28DRAFT_4122 0.89 -0.5 98,529 + +0.3 98,529 + -2.3 98,602 + +0.9 98,836 - EX28DRAFT_4123 0.38 -3.8 99,133 - EX28DRAFT_4123 0.77 -3.1 99,279 + -3.7 99,524 - -0.2 99,532 + +0.5 99,863 - EX28DRAFT_4124 0.18 +0.3 99,963 + EX28DRAFT_4124 0.22 -0.1 100,028 + EX28DRAFT_4124 0.24 +0.2 100,100 - EX28DRAFT_4124 0.27 +0.1 100,140 - EX28DRAFT_4124 0.28 +0.1 101,116 + EX28DRAFT_4124 0.65 -0.5 101,314 + EX28DRAFT_4124 0.72 -0.1 101,687 - EX28DRAFT_4124 0.86 +0.3 101,704 + EX28DRAFT_4124 0.86 +0.2 101,705 - EX28DRAFT_4124 0.86 +0.6 101,830 - -0.8 101,845 + -0.4 101,846 - -0.5 101,846 - +0.1 101,984 + -0.2 101,985 - -0.1 102,029 + +0.1 102,029 + -0.3 102,030 - -0.8 102,030 - -0.1 102,074 + -0.1 102,074 + -0.1 102,074 + -1.3 102,075 - +0.4 102,139 - -0.5 102,140 + +0.1 102,140 + -0.5 102,141 - -0.0 102,141 - +0.2 102,141 - -0.4 102,141 - +0.0 102,141 - +0.2 102,141 - +0.4 102,162 + -1.3 102,162 + +0.5 102,162 + -2.3 102,163 - +1.1 102,320 + -0.5 102,320 + -0.3 102,321 - -0.3 102,321 - +0.9 102,365 + -0.5 102,368 + -1.0 102,368 + -0.2 102,368 + -0.1 102,491 - +0.3 102,512 + -1.0 102,512 + +0.1 102,512 + +0.1 102,512 + -1.7 102,543 + +0.3 102,617 + +0.2 102,672 - -0.1 102,824 + -0.0 102,849 + -0.8 102,849 + +0.4 102,849 + -0.1 102,849 + +0.1 102,849 + +1.2 102,849 + +0.0 102,849 + -0.3 102,850 - +0.7 102,850 - -0.0 102,850 - -1.0 102,850 - -0.3 102,913 - EX28DRAFT_4125 0.11 +0.1 102,950 + EX28DRAFT_4125 0.12 +2.4 102,950 + EX28DRAFT_4125 0.12 +0.6 102,951 - EX28DRAFT_4125 0.12 +0.0 103,037 + EX28DRAFT_4125 0.16 -0.6
Or see this region's nucleotide sequence