Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2504

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2501 and EX28DRAFT_2502 are separated by 101 nucleotidesEX28DRAFT_2502 and EX28DRAFT_2503 overlap by 4 nucleotidesEX28DRAFT_2503 and EX28DRAFT_2504 are separated by 2 nucleotidesEX28DRAFT_2504 and EX28DRAFT_2505 are separated by 218 nucleotides EX28DRAFT_2501: EX28DRAFT_2501 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 2,532,535 to 2,533,995 _2501 EX28DRAFT_2502: EX28DRAFT_2502 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 2,534,097 to 2,534,807 _2502 EX28DRAFT_2503: EX28DRAFT_2503 - ribosomal protein L36, bacterial type, at 2,534,804 to 2,534,944 _2503 EX28DRAFT_2504: EX28DRAFT_2504 - ribosomal protein L31, at 2,534,947 to 2,535,207 _2504 EX28DRAFT_2505: EX28DRAFT_2505 - Predicted signal transduction protein containing sensor and EAL domains, at 2,535,426 to 2,536,991 _2505 Position (kb) 2534 2535 2536Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2533.987 kb on + strandat 2533.988 kb on - strandat 2534.248 kb on - strand, within EX28DRAFT_2502at 2534.509 kb on - strand, within EX28DRAFT_2502at 2534.523 kb on + strand, within EX28DRAFT_2502at 2534.524 kb on - strand, within EX28DRAFT_2502at 2534.650 kb on + strand, within EX28DRAFT_2502at 2534.849 kb on - strand, within EX28DRAFT_2503at 2534.866 kb on - strand, within EX28DRAFT_2503at 2534.889 kb on - strand, within EX28DRAFT_2503at 2534.932 kb on + strandat 2534.932 kb on + strandat 2534.933 kb on - strandat 2534.937 kb on - strandat 2535.031 kb on - strand, within EX28DRAFT_2504at 2535.077 kb on + strand, within EX28DRAFT_2504at 2535.077 kb on + strand, within EX28DRAFT_2504at 2535.078 kb on - strand, within EX28DRAFT_2504at 2535.078 kb on - strand, within EX28DRAFT_2504at 2535.121 kb on - strand, within EX28DRAFT_2504at 2535.144 kb on - strand, within EX28DRAFT_2504at 2535.144 kb on - strand, within EX28DRAFT_2504at 2535.211 kb on - strandat 2535.230 kb on - strandat 2535.237 kb on - strandat 2535.237 kb on - strandat 2535.245 kb on - strandat 2535.248 kb on - strandat 2535.340 kb on - strandat 2535.343 kb on + strandat 2535.343 kb on + strandat 2535.343 kb on + strandat 2535.344 kb on - strandat 2535.405 kb on + strandat 2535.463 kb on + strandat 2535.464 kb on - strandat 2535.464 kb on - strandat 2535.468 kb on - strandat 2535.468 kb on - strandat 2535.552 kb on - strandat 2535.555 kb on + strandat 2535.555 kb on + strandat 2535.556 kb on - strandat 2535.556 kb on - strandat 2535.556 kb on - strandat 2535.647 kb on + strand, within EX28DRAFT_2505at 2535.696 kb on + strand, within EX28DRAFT_2505at 2535.696 kb on + strand, within EX28DRAFT_2505at 2535.714 kb on + strand, within EX28DRAFT_2505at 2535.714 kb on + strand, within EX28DRAFT_2505at 2535.715 kb on - strand, within EX28DRAFT_2505at 2535.715 kb on - strand, within EX28DRAFT_2505at 2535.715 kb on - strand, within EX28DRAFT_2505at 2535.716 kb on + strand, within EX28DRAFT_2505at 2535.791 kb on + strand, within EX28DRAFT_2505at 2535.795 kb on - strand, within EX28DRAFT_2505at 2535.808 kb on - strand, within EX28DRAFT_2505at 2535.852 kb on + strand, within EX28DRAFT_2505at 2535.879 kb on + strand, within EX28DRAFT_2505at 2535.880 kb on - strand, within EX28DRAFT_2505at 2535.976 kb on + strand, within EX28DRAFT_2505at 2536.050 kb on + strand, within EX28DRAFT_2505at 2536.065 kb on + strand, within EX28DRAFT_2505at 2536.066 kb on - strand, within EX28DRAFT_2505at 2536.066 kb on - strand, within EX28DRAFT_2505at 2536.082 kb on - strand, within EX28DRAFT_2505at 2536.097 kb on + strand, within EX28DRAFT_2505at 2536.183 kb on + strand, within EX28DRAFT_2505

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,533,987 + +0.1
2,533,988 - +0.2
2,534,248 - EX28DRAFT_2502 0.21 -0.8
2,534,509 - EX28DRAFT_2502 0.58 -0.1
2,534,523 + EX28DRAFT_2502 0.60 -0.1
2,534,524 - EX28DRAFT_2502 0.60 -0.1
2,534,650 + EX28DRAFT_2502 0.78 -0.9
2,534,849 - EX28DRAFT_2503 0.32 +0.3
2,534,866 - EX28DRAFT_2503 0.44 -0.1
2,534,889 - EX28DRAFT_2503 0.60 +0.2
2,534,932 + +0.3
2,534,932 + +0.0
2,534,933 - +0.0
2,534,937 - +0.5
2,535,031 - EX28DRAFT_2504 0.32 -0.0
2,535,077 + EX28DRAFT_2504 0.50 -0.9
2,535,077 + EX28DRAFT_2504 0.50 +0.2
2,535,078 - EX28DRAFT_2504 0.50 -0.7
2,535,078 - EX28DRAFT_2504 0.50 +0.0
2,535,121 - EX28DRAFT_2504 0.67 -0.7
2,535,144 - EX28DRAFT_2504 0.75 -0.3
2,535,144 - EX28DRAFT_2504 0.75 -0.3
2,535,211 - +0.1
2,535,230 - -0.6
2,535,237 - +0.1
2,535,237 - +0.4
2,535,245 - +0.5
2,535,248 - +0.6
2,535,340 - +0.0
2,535,343 + -0.4
2,535,343 + -0.6
2,535,343 + +0.7
2,535,344 - +0.6
2,535,405 + -0.5
2,535,463 + -0.2
2,535,464 - -0.2
2,535,464 - +0.5
2,535,468 - -0.1
2,535,468 - +0.3
2,535,552 - -1.6
2,535,555 + +1.1
2,535,555 + -1.1
2,535,556 - -0.1
2,535,556 - +0.0
2,535,556 - -0.2
2,535,647 + EX28DRAFT_2505 0.14 -0.4
2,535,696 + EX28DRAFT_2505 0.17 +0.3
2,535,696 + EX28DRAFT_2505 0.17 -0.4
2,535,714 + EX28DRAFT_2505 0.18 +0.1
2,535,714 + EX28DRAFT_2505 0.18 +0.1
2,535,715 - EX28DRAFT_2505 0.18 -0.9
2,535,715 - EX28DRAFT_2505 0.18 -0.9
2,535,715 - EX28DRAFT_2505 0.18 +0.0
2,535,716 + EX28DRAFT_2505 0.19 +3.3
2,535,791 + EX28DRAFT_2505 0.23 +0.6
2,535,795 - EX28DRAFT_2505 0.24 -0.9
2,535,808 - EX28DRAFT_2505 0.24 -0.1
2,535,852 + EX28DRAFT_2505 0.27 -0.6
2,535,879 + EX28DRAFT_2505 0.29 -0.3
2,535,880 - EX28DRAFT_2505 0.29 +0.2
2,535,976 + EX28DRAFT_2505 0.35 -0.0
2,536,050 + EX28DRAFT_2505 0.40 -0.1
2,536,065 + EX28DRAFT_2505 0.41 +0.2
2,536,066 - EX28DRAFT_2505 0.41 -0.0
2,536,066 - EX28DRAFT_2505 0.41 +0.6
2,536,082 - EX28DRAFT_2505 0.42 +0.2
2,536,097 + EX28DRAFT_2505 0.43 -1.9
2,536,183 + EX28DRAFT_2505 0.48 +0.6

Or see this region's nucleotide sequence