Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1083 and EX28DRAFT_1085 are separated by 11 nucleotides EX28DRAFT_1085 and EX28DRAFT_1086 overlap by 8 nucleotides EX28DRAFT_1086 and EX28DRAFT_1087 are separated by 51 nucleotides
EX28DRAFT_1083: EX28DRAFT_1083 - formate dehydrogenase (quinone-dependent) catalytic subunit, at 1,095,761 to 1,098,808
_1083
EX28DRAFT_1085: EX28DRAFT_1085 - formate dehydrogenase, beta subunit, Fe-S containing, at 1,098,820 to 1,099,704
_1085
EX28DRAFT_1086: EX28DRAFT_1086 - formate dehydrogenase, gamma subunit, at 1,099,697 to 1,100,353
_1086
EX28DRAFT_1087: EX28DRAFT_1087 - CcdB protein, at 1,100,405 to 1,100,728
_1087
Position (kb)
1098
1099
1100 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1097.876 kb on + strand, within EX28DRAFT_1083 at 1097.976 kb on - strand, within EX28DRAFT_1083 at 1097.976 kb on - strand, within EX28DRAFT_1083 at 1098.095 kb on + strand, within EX28DRAFT_1083 at 1098.197 kb on + strand, within EX28DRAFT_1083 at 1098.235 kb on + strand, within EX28DRAFT_1083 at 1098.308 kb on + strand, within EX28DRAFT_1083 at 1098.379 kb on + strand, within EX28DRAFT_1083 at 1098.379 kb on + strand, within EX28DRAFT_1083 at 1098.380 kb on - strand, within EX28DRAFT_1083 at 1098.429 kb on - strand, within EX28DRAFT_1083 at 1098.467 kb on - strand, within EX28DRAFT_1083 at 1098.716 kb on + strand at 1098.895 kb on + strand at 1098.896 kb on - strand at 1098.896 kb on - strand at 1098.898 kb on - strand at 1099.055 kb on + strand, within EX28DRAFT_1085 at 1099.272 kb on + strand, within EX28DRAFT_1085 at 1099.459 kb on + strand, within EX28DRAFT_1085 at 1099.495 kb on + strand, within EX28DRAFT_1085 at 1099.495 kb on + strand, within EX28DRAFT_1085 at 1099.495 kb on + strand, within EX28DRAFT_1085 at 1099.496 kb on - strand, within EX28DRAFT_1085 at 1099.496 kb on - strand, within EX28DRAFT_1085 at 1099.496 kb on - strand, within EX28DRAFT_1085 at 1099.496 kb on - strand, within EX28DRAFT_1085 at 1099.646 kb on - strand at 1099.646 kb on - strand at 1099.646 kb on - strand at 1099.702 kb on + strand at 1099.702 kb on + strand at 1099.702 kb on + strand at 1099.702 kb on + strand at 1099.703 kb on - strand at 1099.906 kb on + strand, within EX28DRAFT_1086 at 1099.907 kb on - strand, within EX28DRAFT_1086 at 1099.952 kb on - strand, within EX28DRAFT_1086 at 1099.999 kb on + strand, within EX28DRAFT_1086 at 1099.999 kb on + strand, within EX28DRAFT_1086 at 1099.999 kb on + strand, within EX28DRAFT_1086 at 1099.999 kb on + strand, within EX28DRAFT_1086 at 1100.000 kb on - strand, within EX28DRAFT_1086 at 1100.000 kb on - strand, within EX28DRAFT_1086 at 1100.021 kb on + strand, within EX28DRAFT_1086 at 1100.021 kb on + strand, within EX28DRAFT_1086 at 1100.021 kb on + strand, within EX28DRAFT_1086 at 1100.108 kb on + strand, within EX28DRAFT_1086 at 1100.121 kb on - strand, within EX28DRAFT_1086 at 1100.203 kb on + strand, within EX28DRAFT_1086 at 1100.203 kb on + strand, within EX28DRAFT_1086 at 1100.204 kb on - strand, within EX28DRAFT_1086 at 1100.204 kb on - strand, within EX28DRAFT_1086 at 1100.204 kb on - strand, within EX28DRAFT_1086 at 1100.207 kb on + strand, within EX28DRAFT_1086 at 1100.207 kb on + strand, within EX28DRAFT_1086 at 1100.207 kb on + strand, within EX28DRAFT_1086 at 1100.207 kb on + strand, within EX28DRAFT_1086 at 1100.207 kb on + strand, within EX28DRAFT_1086 at 1100.207 kb on + strand, within EX28DRAFT_1086 at 1100.207 kb on + strand, within EX28DRAFT_1086 at 1100.208 kb on - strand, within EX28DRAFT_1086 at 1100.208 kb on - strand, within EX28DRAFT_1086 at 1100.208 kb on - strand, within EX28DRAFT_1086 at 1100.208 kb on - strand, within EX28DRAFT_1086 at 1100.208 kb on - strand, within EX28DRAFT_1086 at 1100.208 kb on - strand, within EX28DRAFT_1086 at 1100.208 kb on - strand, within EX28DRAFT_1086 at 1100.208 kb on - strand, within EX28DRAFT_1086 at 1100.208 kb on - strand, within EX28DRAFT_1086 at 1100.208 kb on - strand, within EX28DRAFT_1086 at 1100.208 kb on - strand, within EX28DRAFT_1086 at 1100.208 kb on - strand, within EX28DRAFT_1086 at 1100.210 kb on - strand, within EX28DRAFT_1086 at 1100.352 kb on - strand at 1100.406 kb on + strand at 1100.406 kb on + strand at 1100.410 kb on + strand at 1100.447 kb on - strand, within EX28DRAFT_1087 at 1100.471 kb on + strand, within EX28DRAFT_1087 at 1100.471 kb on + strand, within EX28DRAFT_1087 at 1100.471 kb on + strand, within EX28DRAFT_1087 at 1100.472 kb on - strand, within EX28DRAFT_1087 at 1100.475 kb on + strand, within EX28DRAFT_1087 at 1100.579 kb on - strand, within EX28DRAFT_1087 at 1100.592 kb on + strand, within EX28DRAFT_1087 at 1100.592 kb on + strand, within EX28DRAFT_1087 at 1100.641 kb on - strand, within EX28DRAFT_1087
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,097,876 + EX28DRAFT_1083 0.69 +0.5 1,097,976 - EX28DRAFT_1083 0.73 +0.1 1,097,976 - EX28DRAFT_1083 0.73 -1.7 1,098,095 + EX28DRAFT_1083 0.77 -0.2 1,098,197 + EX28DRAFT_1083 0.80 +0.3 1,098,235 + EX28DRAFT_1083 0.81 -0.6 1,098,308 + EX28DRAFT_1083 0.84 +0.1 1,098,379 + EX28DRAFT_1083 0.86 -1.4 1,098,379 + EX28DRAFT_1083 0.86 +0.1 1,098,380 - EX28DRAFT_1083 0.86 -0.1 1,098,429 - EX28DRAFT_1083 0.88 -0.6 1,098,467 - EX28DRAFT_1083 0.89 -0.1 1,098,716 + +0.8 1,098,895 + -0.0 1,098,896 - -0.1 1,098,896 - +0.2 1,098,898 - -0.2 1,099,055 + EX28DRAFT_1085 0.27 +0.1 1,099,272 + EX28DRAFT_1085 0.51 -0.2 1,099,459 + EX28DRAFT_1085 0.72 +0.0 1,099,495 + EX28DRAFT_1085 0.76 -0.1 1,099,495 + EX28DRAFT_1085 0.76 +0.1 1,099,495 + EX28DRAFT_1085 0.76 -0.4 1,099,496 - EX28DRAFT_1085 0.76 +0.9 1,099,496 - EX28DRAFT_1085 0.76 +0.8 1,099,496 - EX28DRAFT_1085 0.76 -0.4 1,099,496 - EX28DRAFT_1085 0.76 +2.2 1,099,646 - +0.1 1,099,646 - +0.5 1,099,646 - -0.1 1,099,702 + -0.4 1,099,702 + +0.1 1,099,702 + -0.1 1,099,702 + +0.9 1,099,703 - +0.1 1,099,906 + EX28DRAFT_1086 0.32 -1.4 1,099,907 - EX28DRAFT_1086 0.32 +0.8 1,099,952 - EX28DRAFT_1086 0.39 -0.5 1,099,999 + EX28DRAFT_1086 0.46 -0.2 1,099,999 + EX28DRAFT_1086 0.46 -0.3 1,099,999 + EX28DRAFT_1086 0.46 -0.4 1,099,999 + EX28DRAFT_1086 0.46 -0.3 1,100,000 - EX28DRAFT_1086 0.46 +0.4 1,100,000 - EX28DRAFT_1086 0.46 +0.1 1,100,021 + EX28DRAFT_1086 0.49 +0.4 1,100,021 + EX28DRAFT_1086 0.49 -0.3 1,100,021 + EX28DRAFT_1086 0.49 +1.0 1,100,108 + EX28DRAFT_1086 0.63 +0.3 1,100,121 - EX28DRAFT_1086 0.65 +1.6 1,100,203 + EX28DRAFT_1086 0.77 +0.4 1,100,203 + EX28DRAFT_1086 0.77 -2.6 1,100,204 - EX28DRAFT_1086 0.77 +0.2 1,100,204 - EX28DRAFT_1086 0.77 -0.1 1,100,204 - EX28DRAFT_1086 0.77 +0.5 1,100,207 + EX28DRAFT_1086 0.78 +0.1 1,100,207 + EX28DRAFT_1086 0.78 +1.1 1,100,207 + EX28DRAFT_1086 0.78 +0.5 1,100,207 + EX28DRAFT_1086 0.78 -0.7 1,100,207 + EX28DRAFT_1086 0.78 +0.2 1,100,207 + EX28DRAFT_1086 0.78 -0.6 1,100,207 + EX28DRAFT_1086 0.78 +0.0 1,100,208 - EX28DRAFT_1086 0.78 +0.3 1,100,208 - EX28DRAFT_1086 0.78 -0.7 1,100,208 - EX28DRAFT_1086 0.78 +0.3 1,100,208 - EX28DRAFT_1086 0.78 -0.1 1,100,208 - EX28DRAFT_1086 0.78 +0.3 1,100,208 - EX28DRAFT_1086 0.78 -0.2 1,100,208 - EX28DRAFT_1086 0.78 +0.2 1,100,208 - EX28DRAFT_1086 0.78 -0.4 1,100,208 - EX28DRAFT_1086 0.78 -1.4 1,100,208 - EX28DRAFT_1086 0.78 +0.5 1,100,208 - EX28DRAFT_1086 0.78 -0.9 1,100,208 - EX28DRAFT_1086 0.78 -0.9 1,100,210 - EX28DRAFT_1086 0.78 -0.2 1,100,352 - +0.7 1,100,406 + -0.4 1,100,406 + -1.2 1,100,410 + -0.2 1,100,447 - EX28DRAFT_1087 0.13 -0.6 1,100,471 + EX28DRAFT_1087 0.20 +0.1 1,100,471 + EX28DRAFT_1087 0.20 -0.2 1,100,471 + EX28DRAFT_1087 0.20 +0.9 1,100,472 - EX28DRAFT_1087 0.21 +0.4 1,100,475 + EX28DRAFT_1087 0.22 +0.6 1,100,579 - EX28DRAFT_1087 0.54 +0.4 1,100,592 + EX28DRAFT_1087 0.58 +0.0 1,100,592 + EX28DRAFT_1087 0.58 -0.9 1,100,641 - EX28DRAFT_1087 0.73 +0.5
Or see this region's nucleotide sequence