Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4396 and EX28DRAFT_4397 are separated by 0 nucleotides EX28DRAFT_4397 and EX28DRAFT_4398 are separated by 96 nucleotides EX28DRAFT_4398 and EX28DRAFT_4399 are separated by 173 nucleotides
EX28DRAFT_4396: EX28DRAFT_4396 - Predicted membrane protein, at 59,091 to 59,510
_4396
EX28DRAFT_4397: EX28DRAFT_4397 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 59,511 to 60,257
_4397
EX28DRAFT_4398: EX28DRAFT_4398 - fructose-1,6-bisphosphatase, class II, at 60,354 to 61,364
_4398
EX28DRAFT_4399: EX28DRAFT_4399 - glycerol kinase, at 61,538 to 63,046
_4399
Position (kb) 60
61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 59.476 kb on - strand at 59.519 kb on - strand at 59.535 kb on - strand at 59.694 kb on + strand, within EX28DRAFT_4397 at 59.807 kb on - strand, within EX28DRAFT_4397 at 59.807 kb on - strand, within EX28DRAFT_4397 at 59.889 kb on - strand, within EX28DRAFT_4397 at 59.896 kb on + strand, within EX28DRAFT_4397 at 59.897 kb on - strand, within EX28DRAFT_4397 at 60.061 kb on + strand, within EX28DRAFT_4397 at 60.061 kb on + strand, within EX28DRAFT_4397 at 60.062 kb on - strand, within EX28DRAFT_4397 at 60.097 kb on + strand, within EX28DRAFT_4397 at 60.186 kb on + strand at 60.186 kb on + strand at 60.187 kb on - strand at 60.187 kb on - strand at 60.197 kb on + strand at 60.197 kb on + strand at 60.198 kb on - strand at 60.198 kb on - strand at 60.222 kb on + strand at 60.286 kb on + strand at 60.286 kb on + strand at 60.287 kb on - strand at 60.295 kb on + strand at 60.296 kb on - strand at 60.398 kb on - strand at 60.572 kb on + strand, within EX28DRAFT_4398 at 60.894 kb on - strand, within EX28DRAFT_4398 at 61.009 kb on + strand, within EX28DRAFT_4398 at 61.009 kb on + strand, within EX28DRAFT_4398 at 61.010 kb on - strand, within EX28DRAFT_4398 at 61.010 kb on - strand, within EX28DRAFT_4398 at 61.010 kb on - strand, within EX28DRAFT_4398 at 61.010 kb on - strand, within EX28DRAFT_4398 at 61.010 kb on - strand, within EX28DRAFT_4398 at 61.013 kb on + strand, within EX28DRAFT_4398 at 61.121 kb on + strand, within EX28DRAFT_4398 at 61.122 kb on - strand, within EX28DRAFT_4398 at 61.122 kb on - strand, within EX28DRAFT_4398 at 61.125 kb on + strand, within EX28DRAFT_4398 at 61.165 kb on + strand, within EX28DRAFT_4398 at 61.166 kb on - strand, within EX28DRAFT_4398 at 61.166 kb on - strand, within EX28DRAFT_4398 at 61.166 kb on - strand, within EX28DRAFT_4398 at 61.301 kb on + strand at 61.301 kb on + strand at 61.301 kb on + strand at 61.302 kb on - strand at 61.302 kb on - strand at 61.302 kb on - strand at 61.487 kb on - strand at 61.539 kb on + strand at 61.607 kb on - strand at 61.799 kb on - strand, within EX28DRAFT_4399 at 61.887 kb on + strand, within EX28DRAFT_4399 at 62.016 kb on + strand, within EX28DRAFT_4399 at 62.016 kb on + strand, within EX28DRAFT_4399 at 62.016 kb on + strand, within EX28DRAFT_4399 at 62.017 kb on - strand, within EX28DRAFT_4399 at 62.053 kb on - strand, within EX28DRAFT_4399 at 62.145 kb on + strand, within EX28DRAFT_4399 at 62.233 kb on + strand, within EX28DRAFT_4399 at 62.233 kb on + strand, within EX28DRAFT_4399 at 62.250 kb on + strand, within EX28DRAFT_4399 at 62.250 kb on + strand, within EX28DRAFT_4399 at 62.250 kb on + strand, within EX28DRAFT_4399 at 62.251 kb on - strand, within EX28DRAFT_4399 at 62.363 kb on - strand, within EX28DRAFT_4399
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 59,476 - +0.7 59,519 - -0.8 59,535 - -1.8 59,694 + EX28DRAFT_4397 0.24 -1.1 59,807 - EX28DRAFT_4397 0.40 -2.1 59,807 - EX28DRAFT_4397 0.40 -1.2 59,889 - EX28DRAFT_4397 0.51 -2.0 59,896 + EX28DRAFT_4397 0.52 -2.5 59,897 - EX28DRAFT_4397 0.52 -2.2 60,061 + EX28DRAFT_4397 0.74 -3.3 60,061 + EX28DRAFT_4397 0.74 -0.4 60,062 - EX28DRAFT_4397 0.74 -2.0 60,097 + EX28DRAFT_4397 0.78 -1.9 60,186 + -0.4 60,186 + -1.2 60,187 - -2.7 60,187 - +0.3 60,197 + -3.0 60,197 + -1.4 60,198 - -1.1 60,198 - -1.2 60,222 + -0.2 60,286 + -0.7 60,286 + -0.4 60,287 - -1.1 60,295 + -0.5 60,296 - -0.5 60,398 - +0.1 60,572 + EX28DRAFT_4398 0.22 -0.3 60,894 - EX28DRAFT_4398 0.53 +0.1 61,009 + EX28DRAFT_4398 0.65 -1.0 61,009 + EX28DRAFT_4398 0.65 +0.4 61,010 - EX28DRAFT_4398 0.65 -2.1 61,010 - EX28DRAFT_4398 0.65 -1.5 61,010 - EX28DRAFT_4398 0.65 +0.1 61,010 - EX28DRAFT_4398 0.65 -1.4 61,010 - EX28DRAFT_4398 0.65 -0.2 61,013 + EX28DRAFT_4398 0.65 -0.0 61,121 + EX28DRAFT_4398 0.76 -2.1 61,122 - EX28DRAFT_4398 0.76 -0.2 61,122 - EX28DRAFT_4398 0.76 -0.3 61,125 + EX28DRAFT_4398 0.76 -0.1 61,165 + EX28DRAFT_4398 0.80 +0.2 61,166 - EX28DRAFT_4398 0.80 +0.7 61,166 - EX28DRAFT_4398 0.80 +0.2 61,166 - EX28DRAFT_4398 0.80 -0.4 61,301 + -0.3 61,301 + -0.2 61,301 + +0.0 61,302 - -0.4 61,302 - -0.9 61,302 - +0.0 61,487 - -0.7 61,539 + -0.6 61,607 - +1.7 61,799 - EX28DRAFT_4399 0.17 +1.5 61,887 + EX28DRAFT_4399 0.23 +1.1 62,016 + EX28DRAFT_4399 0.32 +1.4 62,016 + EX28DRAFT_4399 0.32 +1.8 62,016 + EX28DRAFT_4399 0.32 +2.5 62,017 - EX28DRAFT_4399 0.32 +1.6 62,053 - EX28DRAFT_4399 0.34 +0.9 62,145 + EX28DRAFT_4399 0.40 +0.5 62,233 + EX28DRAFT_4399 0.46 +1.2 62,233 + EX28DRAFT_4399 0.46 +1.5 62,250 + EX28DRAFT_4399 0.47 +0.8 62,250 + EX28DRAFT_4399 0.47 +1.8 62,250 + EX28DRAFT_4399 0.47 +1.9 62,251 - EX28DRAFT_4399 0.47 +0.8 62,363 - EX28DRAFT_4399 0.55 +1.1
Or see this region's nucleotide sequence