Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3607

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3606 and EX28DRAFT_3607 are separated by 211 nucleotidesEX28DRAFT_3607 and EX28DRAFT_3608 are separated by 14 nucleotidesEX28DRAFT_3608 and EX28DRAFT_3609 overlap by 1 nucleotides EX28DRAFT_3606: EX28DRAFT_3606 - AraC-type DNA-binding domain-containing proteins, at 264,833 to 265,702 _3606 EX28DRAFT_3607: EX28DRAFT_3607 - Uncharacterized protein conserved in bacteria, at 265,914 to 266,384 _3607 EX28DRAFT_3608: EX28DRAFT_3608 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 266,399 to 267,088 _3608 EX28DRAFT_3609: EX28DRAFT_3609 - Signal transduction histidine kinase, at 267,088 to 268,512 _3609 Position (kb) 265 266 267Strain fitness (log2 ratio) -2 -1 0 1 2at 265.072 kb on + strand, within EX28DRAFT_3606at 265.072 kb on + strand, within EX28DRAFT_3606at 265.073 kb on - strand, within EX28DRAFT_3606at 265.075 kb on - strand, within EX28DRAFT_3606at 265.111 kb on - strand, within EX28DRAFT_3606at 265.269 kb on + strand, within EX28DRAFT_3606at 265.269 kb on + strand, within EX28DRAFT_3606at 265.270 kb on - strand, within EX28DRAFT_3606at 265.270 kb on - strand, within EX28DRAFT_3606at 265.270 kb on - strand, within EX28DRAFT_3606at 265.270 kb on - strand, within EX28DRAFT_3606at 265.320 kb on + strand, within EX28DRAFT_3606at 265.527 kb on - strand, within EX28DRAFT_3606at 265.543 kb on + strand, within EX28DRAFT_3606at 265.544 kb on - strand, within EX28DRAFT_3606at 265.545 kb on + strand, within EX28DRAFT_3606at 265.546 kb on - strand, within EX28DRAFT_3606at 265.546 kb on - strand, within EX28DRAFT_3606at 265.546 kb on - strand, within EX28DRAFT_3606at 265.702 kb on + strandat 265.702 kb on + strandat 265.702 kb on + strandat 265.702 kb on + strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.719 kb on + strandat 265.719 kb on + strandat 265.719 kb on + strandat 265.756 kb on + strandat 265.831 kb on - strandat 265.832 kb on + strandat 265.837 kb on + strandat 265.866 kb on + strandat 266.079 kb on + strand, within EX28DRAFT_3607at 266.196 kb on - strand, within EX28DRAFT_3607at 266.224 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.305 kb on - strand, within EX28DRAFT_3607at 266.330 kb on - strand, within EX28DRAFT_3607at 266.370 kb on - strandat 266.382 kb on + strandat 266.382 kb on + strandat 266.459 kb on + strandat 266.460 kb on - strandat 266.460 kb on - strandat 266.662 kb on - strand, within EX28DRAFT_3608at 266.699 kb on + strand, within EX28DRAFT_3608at 266.699 kb on + strand, within EX28DRAFT_3608at 266.700 kb on - strand, within EX28DRAFT_3608at 266.700 kb on - strand, within EX28DRAFT_3608at 266.946 kb on + strand, within EX28DRAFT_3608at 267.068 kb on + strandat 267.069 kb on - strandat 267.176 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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265,072 + EX28DRAFT_3606 0.27 +0.3
265,072 + EX28DRAFT_3606 0.27 +0.4
265,073 - EX28DRAFT_3606 0.28 +0.1
265,075 - EX28DRAFT_3606 0.28 +0.4
265,111 - EX28DRAFT_3606 0.32 +0.4
265,269 + EX28DRAFT_3606 0.50 -1.3
265,269 + EX28DRAFT_3606 0.50 +0.2
265,270 - EX28DRAFT_3606 0.50 -2.5
265,270 - EX28DRAFT_3606 0.50 -0.1
265,270 - EX28DRAFT_3606 0.50 +0.0
265,270 - EX28DRAFT_3606 0.50 +0.8
265,320 + EX28DRAFT_3606 0.56 +0.4
265,527 - EX28DRAFT_3606 0.80 +0.9
265,543 + EX28DRAFT_3606 0.82 +0.2
265,544 - EX28DRAFT_3606 0.82 -0.1
265,545 + EX28DRAFT_3606 0.82 +0.1
265,546 - EX28DRAFT_3606 0.82 +0.1
265,546 - EX28DRAFT_3606 0.82 +0.9
265,546 - EX28DRAFT_3606 0.82 +0.9
265,702 + +1.9
265,702 + -1.8
265,702 + +1.7
265,702 + +0.6
265,703 - +0.3
265,703 - -1.9
265,703 - +0.2
265,703 - +0.9
265,703 - -0.7
265,703 - +0.1
265,703 - +0.7
265,704 + +0.2
265,704 + +0.6
265,704 + -0.2
265,704 + +0.4
265,704 + +0.7
265,704 + +0.7
265,704 + +0.4
265,704 + +0.0
265,704 + +0.4
265,705 - +0.3
265,705 - +0.3
265,705 - -0.1
265,705 - +0.9
265,705 - +0.3
265,705 - +1.1
265,705 - -0.4
265,719 + +0.1
265,719 + +0.9
265,719 + -0.8
265,756 + +0.5
265,831 - +0.1
265,832 + -0.9
265,837 + +1.0
265,866 + -0.3
266,079 + EX28DRAFT_3607 0.35 +2.1
266,196 - EX28DRAFT_3607 0.60 +0.2
266,224 + EX28DRAFT_3607 0.66 +0.1
266,277 + EX28DRAFT_3607 0.77 -0.0
266,277 + EX28DRAFT_3607 0.77 -0.1
266,277 + EX28DRAFT_3607 0.77 +0.2
266,277 + EX28DRAFT_3607 0.77 +0.0
266,277 + EX28DRAFT_3607 0.77 -0.3
266,305 - EX28DRAFT_3607 0.83 +0.2
266,330 - EX28DRAFT_3607 0.88 +0.5
266,370 - +0.3
266,382 + +0.2
266,382 + +0.1
266,459 + +0.5
266,460 - +0.5
266,460 - -0.3
266,662 - EX28DRAFT_3608 0.38 -0.7
266,699 + EX28DRAFT_3608 0.43 +0.2
266,699 + EX28DRAFT_3608 0.43 +0.1
266,700 - EX28DRAFT_3608 0.44 -0.2
266,700 - EX28DRAFT_3608 0.44 -0.1
266,946 + EX28DRAFT_3608 0.79 -0.3
267,068 + -0.6
267,069 - -0.5
267,176 + -0.0

Or see this region's nucleotide sequence