Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2838 and EX28DRAFT_2839 are separated by 116 nucleotides EX28DRAFT_2839 and EX28DRAFT_2840 overlap by 7 nucleotides EX28DRAFT_2840 and EX28DRAFT_2841 overlap by 20 nucleotides
EX28DRAFT_2838: EX28DRAFT_2838 - Membrane proteins related to metalloendopeptidases, at 140,819 to 141,943
_2838
EX28DRAFT_2839: EX28DRAFT_2839 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 142,060 to 142,686
_2839
EX28DRAFT_2840: EX28DRAFT_2840 - 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11), at 142,680 to 143,441
_2840
EX28DRAFT_2841: EX28DRAFT_2841 - tRNA pseudouridine synthase, TruD family, at 143,422 to 144,471
_2841
Position (kb) 142
143 Strain fitness (log2 ratio) -2
-1
0
1 at 141.121 kb on + strand, within EX28DRAFT_2838 at 141.208 kb on + strand, within EX28DRAFT_2838 at 141.209 kb on - strand, within EX28DRAFT_2838 at 141.209 kb on - strand, within EX28DRAFT_2838 at 141.283 kb on + strand, within EX28DRAFT_2838 at 141.287 kb on - strand, within EX28DRAFT_2838 at 141.305 kb on - strand, within EX28DRAFT_2838 at 141.337 kb on + strand, within EX28DRAFT_2838 at 141.386 kb on - strand, within EX28DRAFT_2838 at 141.440 kb on - strand, within EX28DRAFT_2838 at 141.561 kb on + strand, within EX28DRAFT_2838 at 141.561 kb on + strand, within EX28DRAFT_2838 at 141.562 kb on - strand, within EX28DRAFT_2838 at 141.590 kb on - strand, within EX28DRAFT_2838 at 141.591 kb on + strand, within EX28DRAFT_2838 at 141.591 kb on + strand, within EX28DRAFT_2838 at 141.591 kb on + strand, within EX28DRAFT_2838 at 141.592 kb on - strand, within EX28DRAFT_2838 at 141.609 kb on + strand, within EX28DRAFT_2838 at 141.645 kb on + strand, within EX28DRAFT_2838 at 141.856 kb on + strand at 141.857 kb on - strand at 141.857 kb on - strand at 141.866 kb on - strand at 141.945 kb on + strand at 141.968 kb on - strand at 141.986 kb on - strand at 142.020 kb on - strand at 142.038 kb on + strand at 142.039 kb on - strand at 142.120 kb on - strand at 142.317 kb on + strand, within EX28DRAFT_2839 at 142.360 kb on + strand, within EX28DRAFT_2839 at 142.361 kb on - strand, within EX28DRAFT_2839 at 142.387 kb on + strand, within EX28DRAFT_2839 at 142.387 kb on + strand, within EX28DRAFT_2839 at 142.388 kb on - strand, within EX28DRAFT_2839 at 142.388 kb on - strand, within EX28DRAFT_2839 at 142.388 kb on - strand, within EX28DRAFT_2839 at 142.502 kb on + strand, within EX28DRAFT_2839 at 142.502 kb on + strand, within EX28DRAFT_2839 at 142.502 kb on + strand, within EX28DRAFT_2839 at 142.503 kb on - strand, within EX28DRAFT_2839 at 142.503 kb on - strand, within EX28DRAFT_2839 at 142.503 kb on - strand, within EX28DRAFT_2839 at 142.503 kb on - strand, within EX28DRAFT_2839 at 142.503 kb on - strand, within EX28DRAFT_2839 at 142.544 kb on - strand, within EX28DRAFT_2839 at 142.580 kb on - strand, within EX28DRAFT_2839 at 142.740 kb on - strand at 142.742 kb on - strand at 142.781 kb on - strand, within EX28DRAFT_2840 at 142.830 kb on - strand, within EX28DRAFT_2840 at 143.134 kb on + strand, within EX28DRAFT_2840 at 143.135 kb on - strand, within EX28DRAFT_2840 at 143.135 kb on - strand, within EX28DRAFT_2840 at 143.316 kb on - strand, within EX28DRAFT_2840 at 143.491 kb on - strand at 143.549 kb on - strand, within EX28DRAFT_2841 at 143.549 kb on - strand, within EX28DRAFT_2841
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 141,121 + EX28DRAFT_2838 0.27 -0.9 141,208 + EX28DRAFT_2838 0.35 -1.9 141,209 - EX28DRAFT_2838 0.35 -0.3 141,209 - EX28DRAFT_2838 0.35 -0.5 141,283 + EX28DRAFT_2838 0.41 -0.6 141,287 - EX28DRAFT_2838 0.42 -0.4 141,305 - EX28DRAFT_2838 0.43 -0.5 141,337 + EX28DRAFT_2838 0.46 -1.2 141,386 - EX28DRAFT_2838 0.50 -0.2 141,440 - EX28DRAFT_2838 0.55 -0.8 141,561 + EX28DRAFT_2838 0.66 -0.2 141,561 + EX28DRAFT_2838 0.66 -0.3 141,562 - EX28DRAFT_2838 0.66 -0.3 141,590 - EX28DRAFT_2838 0.69 -0.3 141,591 + EX28DRAFT_2838 0.69 +0.4 141,591 + EX28DRAFT_2838 0.69 -0.0 141,591 + EX28DRAFT_2838 0.69 -0.1 141,592 - EX28DRAFT_2838 0.69 -0.2 141,609 + EX28DRAFT_2838 0.70 -0.1 141,645 + EX28DRAFT_2838 0.73 -0.1 141,856 + +0.7 141,857 - +0.1 141,857 - +0.0 141,866 - -0.1 141,945 + +0.8 141,968 - -0.3 141,986 - +0.6 142,020 - +0.4 142,038 + -0.6 142,039 - -0.2 142,120 - +0.0 142,317 + EX28DRAFT_2839 0.41 -0.8 142,360 + EX28DRAFT_2839 0.48 -0.2 142,361 - EX28DRAFT_2839 0.48 +0.2 142,387 + EX28DRAFT_2839 0.52 -0.5 142,387 + EX28DRAFT_2839 0.52 -0.1 142,388 - EX28DRAFT_2839 0.52 -0.5 142,388 - EX28DRAFT_2839 0.52 -0.6 142,388 - EX28DRAFT_2839 0.52 -0.1 142,502 + EX28DRAFT_2839 0.70 -0.9 142,502 + EX28DRAFT_2839 0.70 -0.6 142,502 + EX28DRAFT_2839 0.70 -1.3 142,503 - EX28DRAFT_2839 0.71 +0.3 142,503 - EX28DRAFT_2839 0.71 -0.0 142,503 - EX28DRAFT_2839 0.71 -0.4 142,503 - EX28DRAFT_2839 0.71 -0.6 142,503 - EX28DRAFT_2839 0.71 -0.8 142,544 - EX28DRAFT_2839 0.77 -0.0 142,580 - EX28DRAFT_2839 0.83 +0.0 142,740 - -0.1 142,742 - +0.4 142,781 - EX28DRAFT_2840 0.13 -0.1 142,830 - EX28DRAFT_2840 0.20 +0.2 143,134 + EX28DRAFT_2840 0.60 +0.2 143,135 - EX28DRAFT_2840 0.60 +0.3 143,135 - EX28DRAFT_2840 0.60 -0.9 143,316 - EX28DRAFT_2840 0.83 +0.2 143,491 - +0.1 143,549 - EX28DRAFT_2841 0.12 -0.4 143,549 - EX28DRAFT_2841 0.12 -0.1
Or see this region's nucleotide sequence