Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2505 and EX28DRAFT_2506 overlap by 8 nucleotides EX28DRAFT_2506 and EX28DRAFT_2507 are separated by 134 nucleotides EX28DRAFT_2507 and EX28DRAFT_2508 are separated by 38 nucleotides
EX28DRAFT_2505: EX28DRAFT_2505 - Predicted signal transduction protein containing sensor and EAL domains, at 2,535,426 to 2,536,991
_2505
EX28DRAFT_2506: EX28DRAFT_2506 - Uncharacterized protein conserved in bacteria, at 2,536,984 to 2,537,256
_2506
EX28DRAFT_2507: EX28DRAFT_2507 - ABC-type uncharacterized transport system, permease component, at 2,537,391 to 2,538,218
_2507
EX28DRAFT_2508: EX28DRAFT_2508 - Beta-galactosidase/beta-glucuronidase, at 2,538,257 to 2,541,346
_2508
Position (kb)
2537
2538
2539 Strain fitness (log2 ratio)
-1
0
1 at 2536.461 kb on - strand, within EX28DRAFT_2505 at 2536.496 kb on + strand, within EX28DRAFT_2505 at 2536.496 kb on + strand, within EX28DRAFT_2505 at 2536.496 kb on + strand, within EX28DRAFT_2505 at 2536.497 kb on - strand, within EX28DRAFT_2505 at 2536.680 kb on - strand, within EX28DRAFT_2505 at 2536.680 kb on - strand, within EX28DRAFT_2505 at 2536.683 kb on + strand, within EX28DRAFT_2505 at 2536.683 kb on + strand, within EX28DRAFT_2505 at 2536.683 kb on + strand, within EX28DRAFT_2505 at 2536.683 kb on + strand, within EX28DRAFT_2505 at 2536.684 kb on - strand, within EX28DRAFT_2505 at 2536.684 kb on - strand, within EX28DRAFT_2505 at 2536.684 kb on - strand, within EX28DRAFT_2505 at 2536.684 kb on - strand, within EX28DRAFT_2505 at 2536.685 kb on + strand, within EX28DRAFT_2505 at 2536.686 kb on - strand, within EX28DRAFT_2505 at 2536.750 kb on + strand, within EX28DRAFT_2505 at 2536.760 kb on + strand, within EX28DRAFT_2505 at 2536.817 kb on - strand, within EX28DRAFT_2505 at 2536.950 kb on - strand at 2536.989 kb on + strand at 2536.989 kb on + strand at 2536.990 kb on - strand at 2537.247 kb on + strand at 2537.263 kb on - strand at 2537.263 kb on - strand at 2537.358 kb on + strand at 2537.452 kb on + strand at 2537.452 kb on + strand at 2537.514 kb on - strand, within EX28DRAFT_2507 at 2537.514 kb on - strand, within EX28DRAFT_2507 at 2537.615 kb on - strand, within EX28DRAFT_2507 at 2537.920 kb on + strand, within EX28DRAFT_2507 at 2537.921 kb on - strand, within EX28DRAFT_2507 at 2538.170 kb on - strand at 2538.180 kb on + strand at 2538.181 kb on - strand at 2538.181 kb on - strand at 2538.181 kb on - strand at 2538.283 kb on + strand at 2538.446 kb on - strand at 2538.544 kb on + strand at 2538.546 kb on + strand at 2538.546 kb on + strand at 2538.546 kb on + strand at 2538.573 kb on - strand, within EX28DRAFT_2508 at 2538.573 kb on - strand, within EX28DRAFT_2508 at 2538.573 kb on - strand, within EX28DRAFT_2508 at 2538.885 kb on + strand, within EX28DRAFT_2508 at 2538.885 kb on + strand, within EX28DRAFT_2508 at 2538.886 kb on - strand, within EX28DRAFT_2508 at 2539.150 kb on + strand, within EX28DRAFT_2508
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,536,461 - EX28DRAFT_2505 0.66 -1.3 2,536,496 + EX28DRAFT_2505 0.68 -0.3 2,536,496 + EX28DRAFT_2505 0.68 -0.6 2,536,496 + EX28DRAFT_2505 0.68 -1.6 2,536,497 - EX28DRAFT_2505 0.68 -0.3 2,536,680 - EX28DRAFT_2505 0.80 -0.8 2,536,680 - EX28DRAFT_2505 0.80 +0.2 2,536,683 + EX28DRAFT_2505 0.80 -1.2 2,536,683 + EX28DRAFT_2505 0.80 -1.1 2,536,683 + EX28DRAFT_2505 0.80 -0.2 2,536,683 + EX28DRAFT_2505 0.80 -0.0 2,536,684 - EX28DRAFT_2505 0.80 -0.2 2,536,684 - EX28DRAFT_2505 0.80 -0.1 2,536,684 - EX28DRAFT_2505 0.80 +0.5 2,536,684 - EX28DRAFT_2505 0.80 -0.7 2,536,685 + EX28DRAFT_2505 0.80 -0.1 2,536,686 - EX28DRAFT_2505 0.80 -1.0 2,536,750 + EX28DRAFT_2505 0.85 -0.1 2,536,760 + EX28DRAFT_2505 0.85 -1.3 2,536,817 - EX28DRAFT_2505 0.89 -1.4 2,536,950 - -0.7 2,536,989 + +0.7 2,536,989 + -0.2 2,536,990 - -0.2 2,537,247 + +0.0 2,537,263 - -1.3 2,537,263 - +0.1 2,537,358 + +0.8 2,537,452 + +0.2 2,537,452 + -0.0 2,537,514 - EX28DRAFT_2507 0.15 -0.6 2,537,514 - EX28DRAFT_2507 0.15 -0.4 2,537,615 - EX28DRAFT_2507 0.27 -0.4 2,537,920 + EX28DRAFT_2507 0.64 -0.3 2,537,921 - EX28DRAFT_2507 0.64 -0.3 2,538,170 - -0.3 2,538,180 + +0.8 2,538,181 - -0.2 2,538,181 - -0.5 2,538,181 - -0.3 2,538,283 + +0.3 2,538,446 - -0.7 2,538,544 + -1.4 2,538,546 + -0.4 2,538,546 + -0.1 2,538,546 + -0.7 2,538,573 - EX28DRAFT_2508 0.10 +0.3 2,538,573 - EX28DRAFT_2508 0.10 -0.1 2,538,573 - EX28DRAFT_2508 0.10 +0.6 2,538,885 + EX28DRAFT_2508 0.20 +0.3 2,538,885 + EX28DRAFT_2508 0.20 +0.3 2,538,886 - EX28DRAFT_2508 0.20 +0.5 2,539,150 + EX28DRAFT_2508 0.29 +0.7
Or see this region's nucleotide sequence