Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2240 and EX28DRAFT_2241 are separated by 61 nucleotides EX28DRAFT_2241 and EX28DRAFT_2242 are separated by 303 nucleotides EX28DRAFT_2242 and EX28DRAFT_2243 are separated by 105 nucleotides
EX28DRAFT_2240: EX28DRAFT_2240 - phosphoglycerate mutase, BPG-dependent, family 1, at 2,264,149 to 2,264,901
_2240
EX28DRAFT_2241: EX28DRAFT_2241 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 2,264,963 to 2,266,015
_2241
EX28DRAFT_2242: EX28DRAFT_2242 - YbgS-like protein, at 2,266,319 to 2,266,699
_2242
EX28DRAFT_2243: EX28DRAFT_2243 - cation diffusion facilitator family transporter, at 2,266,805 to 2,267,743
_2243
Position (kb)
2264
2265
2266
2267 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2264.039 kb on + strand at 2264.039 kb on + strand at 2264.143 kb on + strand at 2264.160 kb on + strand at 2264.274 kb on + strand, within EX28DRAFT_2240 at 2264.275 kb on - strand, within EX28DRAFT_2240 at 2264.960 kb on - strand at 2265.007 kb on + strand at 2265.008 kb on - strand at 2265.058 kb on - strand at 2265.091 kb on + strand, within EX28DRAFT_2241 at 2265.092 kb on - strand, within EX28DRAFT_2241 at 2265.092 kb on - strand, within EX28DRAFT_2241 at 2265.092 kb on - strand, within EX28DRAFT_2241 at 2265.092 kb on - strand, within EX28DRAFT_2241 at 2265.174 kb on - strand, within EX28DRAFT_2241 at 2265.295 kb on - strand, within EX28DRAFT_2241 at 2265.295 kb on - strand, within EX28DRAFT_2241 at 2265.869 kb on - strand, within EX28DRAFT_2241 at 2265.883 kb on + strand, within EX28DRAFT_2241 at 2265.883 kb on + strand, within EX28DRAFT_2241 at 2265.913 kb on + strand at 2266.036 kb on - strand at 2266.041 kb on + strand at 2266.042 kb on - strand at 2266.068 kb on - strand at 2266.474 kb on + strand, within EX28DRAFT_2242 at 2266.487 kb on - strand, within EX28DRAFT_2242 at 2266.487 kb on - strand, within EX28DRAFT_2242 at 2266.519 kb on + strand, within EX28DRAFT_2242 at 2266.519 kb on + strand, within EX28DRAFT_2242 at 2266.520 kb on - strand, within EX28DRAFT_2242 at 2266.585 kb on + strand, within EX28DRAFT_2242 at 2266.585 kb on + strand, within EX28DRAFT_2242 at 2266.585 kb on + strand, within EX28DRAFT_2242 at 2266.585 kb on + strand, within EX28DRAFT_2242 at 2266.585 kb on + strand, within EX28DRAFT_2242 at 2266.585 kb on + strand, within EX28DRAFT_2242 at 2266.606 kb on + strand, within EX28DRAFT_2242 at 2266.606 kb on + strand, within EX28DRAFT_2242 at 2266.656 kb on + strand, within EX28DRAFT_2242 at 2266.656 kb on + strand, within EX28DRAFT_2242 at 2266.657 kb on - strand, within EX28DRAFT_2242 at 2266.675 kb on + strand at 2266.675 kb on + strand at 2266.759 kb on - strand at 2266.762 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,264,039 + +0.9 2,264,039 + -1.0 2,264,143 + +1.0 2,264,160 + +0.8 2,264,274 + EX28DRAFT_2240 0.17 -1.1 2,264,275 - EX28DRAFT_2240 0.17 -2.8 2,264,960 - +0.4 2,265,007 + -1.4 2,265,008 - -0.3 2,265,058 - -0.3 2,265,091 + EX28DRAFT_2241 0.12 -0.8 2,265,092 - EX28DRAFT_2241 0.12 -0.6 2,265,092 - EX28DRAFT_2241 0.12 +0.1 2,265,092 - EX28DRAFT_2241 0.12 -0.6 2,265,092 - EX28DRAFT_2241 0.12 -0.5 2,265,174 - EX28DRAFT_2241 0.20 -0.4 2,265,295 - EX28DRAFT_2241 0.32 -0.4 2,265,295 - EX28DRAFT_2241 0.32 +0.6 2,265,869 - EX28DRAFT_2241 0.86 -0.3 2,265,883 + EX28DRAFT_2241 0.87 -0.1 2,265,883 + EX28DRAFT_2241 0.87 -1.4 2,265,913 + -0.3 2,266,036 - -0.9 2,266,041 + -0.0 2,266,042 - +0.4 2,266,068 - -0.4 2,266,474 + EX28DRAFT_2242 0.41 +0.5 2,266,487 - EX28DRAFT_2242 0.44 +2.0 2,266,487 - EX28DRAFT_2242 0.44 +1.0 2,266,519 + EX28DRAFT_2242 0.52 +0.7 2,266,519 + EX28DRAFT_2242 0.52 -0.3 2,266,520 - EX28DRAFT_2242 0.53 +0.3 2,266,585 + EX28DRAFT_2242 0.70 +1.2 2,266,585 + EX28DRAFT_2242 0.70 +0.1 2,266,585 + EX28DRAFT_2242 0.70 +0.2 2,266,585 + EX28DRAFT_2242 0.70 -0.5 2,266,585 + EX28DRAFT_2242 0.70 -0.2 2,266,585 + EX28DRAFT_2242 0.70 +0.1 2,266,606 + EX28DRAFT_2242 0.75 -0.3 2,266,606 + EX28DRAFT_2242 0.75 -0.3 2,266,656 + EX28DRAFT_2242 0.88 -0.2 2,266,656 + EX28DRAFT_2242 0.88 +0.9 2,266,657 - EX28DRAFT_2242 0.89 +0.0 2,266,675 + -0.0 2,266,675 + -0.1 2,266,759 - +0.3 2,266,762 - +0.1
Or see this region's nucleotide sequence