Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2015

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2014 and EX28DRAFT_2015 are separated by 3 nucleotidesEX28DRAFT_2015 and EX28DRAFT_2016 are separated by 124 nucleotidesEX28DRAFT_2016 and EX28DRAFT_2017 overlap by 24 nucleotides EX28DRAFT_2014: EX28DRAFT_2014 - bacterial condensin subunit MukF, at 2,024,491 to 2,025,813 _2014 EX28DRAFT_2015: EX28DRAFT_2015 - 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase, at 2,025,817 to 2,026,596 _2015 EX28DRAFT_2016: EX28DRAFT_2016 - Uncharacterized conserved protein, at 2,026,721 to 2,027,500 _2016 EX28DRAFT_2017: EX28DRAFT_2017 - Phosphotransferase enzyme family, at 2,027,477 to 2,028,370 _2017 Position (kb) 2025 2026 2027Strain fitness (log2 ratio) -1 0 1 2at 2025.856 kb on - strandat 2025.856 kb on - strandat 2025.856 kb on - strandat 2025.858 kb on - strandat 2025.905 kb on - strand, within EX28DRAFT_2015at 2025.957 kb on - strand, within EX28DRAFT_2015at 2026.098 kb on - strand, within EX28DRAFT_2015at 2026.149 kb on - strand, within EX28DRAFT_2015at 2026.202 kb on - strand, within EX28DRAFT_2015at 2026.305 kb on + strand, within EX28DRAFT_2015at 2026.306 kb on - strand, within EX28DRAFT_2015at 2026.670 kb on + strandat 2026.670 kb on + strandat 2026.670 kb on + strandat 2026.671 kb on - strandat 2026.674 kb on - strandat 2026.674 kb on - strandat 2026.683 kb on - strandat 2026.683 kb on - strandat 2026.693 kb on + strandat 2026.693 kb on + strandat 2026.693 kb on + strandat 2026.693 kb on + strandat 2026.694 kb on - strandat 2026.694 kb on - strandat 2026.695 kb on + strandat 2026.695 kb on + strandat 2026.696 kb on - strandat 2026.696 kb on - strandat 2026.736 kb on - strandat 2026.742 kb on + strandat 2026.743 kb on - strandat 2026.743 kb on - strandat 2026.846 kb on + strand, within EX28DRAFT_2016at 2026.849 kb on + strand, within EX28DRAFT_2016at 2026.867 kb on + strand, within EX28DRAFT_2016at 2026.909 kb on - strand, within EX28DRAFT_2016at 2026.961 kb on + strand, within EX28DRAFT_2016at 2026.962 kb on - strand, within EX28DRAFT_2016at 2026.985 kb on + strand, within EX28DRAFT_2016at 2026.985 kb on + strand, within EX28DRAFT_2016at 2026.987 kb on + strand, within EX28DRAFT_2016at 2026.987 kb on + strand, within EX28DRAFT_2016at 2026.987 kb on + strand, within EX28DRAFT_2016at 2026.987 kb on + strand, within EX28DRAFT_2016at 2026.988 kb on - strand, within EX28DRAFT_2016at 2027.212 kb on + strand, within EX28DRAFT_2016at 2027.419 kb on + strand, within EX28DRAFT_2016at 2027.578 kb on - strand, within EX28DRAFT_2017

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,025,856 - +0.8
2,025,856 - -0.0
2,025,856 - +0.5
2,025,858 - -1.0
2,025,905 - EX28DRAFT_2015 0.11 +0.9
2,025,957 - EX28DRAFT_2015 0.18 +0.1
2,026,098 - EX28DRAFT_2015 0.36 +1.0
2,026,149 - EX28DRAFT_2015 0.43 +1.1
2,026,202 - EX28DRAFT_2015 0.49 +0.1
2,026,305 + EX28DRAFT_2015 0.63 +0.3
2,026,306 - EX28DRAFT_2015 0.63 +0.2
2,026,670 + +2.2
2,026,670 + -0.3
2,026,670 + -0.6
2,026,671 - -0.1
2,026,674 - +0.1
2,026,674 - -0.0
2,026,683 - -0.4
2,026,683 - +1.8
2,026,693 + -0.1
2,026,693 + +0.0
2,026,693 + +0.2
2,026,693 + -0.2
2,026,694 - +0.2
2,026,694 - -0.8
2,026,695 + +0.7
2,026,695 + +0.3
2,026,696 - -0.1
2,026,696 - +0.4
2,026,736 - +0.1
2,026,742 + -0.2
2,026,743 - -0.1
2,026,743 - +0.1
2,026,846 + EX28DRAFT_2016 0.16 +0.2
2,026,849 + EX28DRAFT_2016 0.16 +0.4
2,026,867 + EX28DRAFT_2016 0.19 +0.1
2,026,909 - EX28DRAFT_2016 0.24 +0.4
2,026,961 + EX28DRAFT_2016 0.31 +0.2
2,026,962 - EX28DRAFT_2016 0.31 -0.2
2,026,985 + EX28DRAFT_2016 0.34 +0.3
2,026,985 + EX28DRAFT_2016 0.34 +1.0
2,026,987 + EX28DRAFT_2016 0.34 +0.1
2,026,987 + EX28DRAFT_2016 0.34 +0.5
2,026,987 + EX28DRAFT_2016 0.34 -0.0
2,026,987 + EX28DRAFT_2016 0.34 +0.2
2,026,988 - EX28DRAFT_2016 0.34 -0.0
2,027,212 + EX28DRAFT_2016 0.63 +1.8
2,027,419 + EX28DRAFT_2016 0.89 +0.4
2,027,578 - EX28DRAFT_2017 0.11 -0.2

Or see this region's nucleotide sequence