Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS03560

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS03555 and ABIE40_RS03560 overlap by 4 nucleotidesABIE40_RS03560 and ABIE40_RS03565 are separated by 94 nucleotides ABIE40_RS03555: ABIE40_RS03555 - FAD-linked oxidase C-terminal domain-containing protein, at 705,894 to 707,333 _RS03555 ABIE40_RS03560: ABIE40_RS03560 - FAD-binding protein, at 707,330 to 708,533 _RS03560 ABIE40_RS03565: ABIE40_RS03565 - glycolate oxidase subunit GlcF, at 708,628 to 709,938 _RS03565 Position (kb) 707 708 709Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 706.371 kb on - strand, within ABIE40_RS03555at 706.407 kb on + strand, within ABIE40_RS03555at 706.620 kb on - strand, within ABIE40_RS03555at 706.620 kb on - strand, within ABIE40_RS03555at 706.620 kb on - strand, within ABIE40_RS03555at 706.620 kb on - strand, within ABIE40_RS03555at 706.941 kb on + strand, within ABIE40_RS03555at 706.941 kb on + strand, within ABIE40_RS03555at 706.942 kb on - strand, within ABIE40_RS03555at 706.983 kb on + strand, within ABIE40_RS03555at 706.983 kb on + strand, within ABIE40_RS03555at 706.983 kb on + strand, within ABIE40_RS03555at 706.983 kb on + strand, within ABIE40_RS03555at 706.983 kb on + strand, within ABIE40_RS03555at 706.983 kb on + strand, within ABIE40_RS03555at 706.983 kb on + strand, within ABIE40_RS03555at 706.984 kb on - strand, within ABIE40_RS03555at 706.984 kb on - strand, within ABIE40_RS03555at 706.984 kb on - strand, within ABIE40_RS03555at 707.019 kb on + strand, within ABIE40_RS03555at 707.135 kb on + strand, within ABIE40_RS03555at 707.136 kb on - strand, within ABIE40_RS03555at 707.136 kb on - strand, within ABIE40_RS03555at 707.136 kb on - strand, within ABIE40_RS03555at 707.223 kb on + strandat 707.223 kb on + strandat 707.223 kb on + strandat 707.224 kb on - strandat 707.412 kb on + strandat 707.502 kb on + strand, within ABIE40_RS03560at 707.503 kb on - strand, within ABIE40_RS03560at 707.504 kb on + strand, within ABIE40_RS03560at 707.504 kb on + strand, within ABIE40_RS03560at 707.504 kb on + strand, within ABIE40_RS03560at 707.504 kb on + strand, within ABIE40_RS03560at 708.181 kb on - strand, within ABIE40_RS03560at 708.181 kb on - strand, within ABIE40_RS03560at 708.181 kb on - strand, within ABIE40_RS03560at 708.181 kb on - strand, within ABIE40_RS03560at 708.181 kb on - strand, within ABIE40_RS03560at 708.288 kb on + strand, within ABIE40_RS03560at 708.289 kb on - strand, within ABIE40_RS03560at 708.289 kb on - strand, within ABIE40_RS03560at 708.289 kb on - strand, within ABIE40_RS03560at 708.291 kb on + strand, within ABIE40_RS03560at 708.291 kb on + strand, within ABIE40_RS03560at 708.291 kb on + strand, within ABIE40_RS03560at 708.291 kb on + strand, within ABIE40_RS03560at 708.291 kb on + strand, within ABIE40_RS03560at 708.291 kb on + strand, within ABIE40_RS03560at 708.291 kb on + strand, within ABIE40_RS03560at 708.292 kb on - strand, within ABIE40_RS03560at 708.292 kb on - strand, within ABIE40_RS03560at 708.292 kb on - strand, within ABIE40_RS03560at 708.506 kb on - strandat 708.551 kb on + strandat 708.551 kb on + strandat 708.551 kb on + strandat 708.551 kb on + strandat 708.551 kb on + strandat 708.552 kb on - strandat 708.552 kb on - strandat 708.552 kb on - strandat 708.739 kb on + strandat 708.739 kb on + strandat 708.740 kb on - strandat 708.740 kb on - strandat 708.740 kb on - strandat 708.784 kb on + strand, within ABIE40_RS03565at 708.784 kb on + strand, within ABIE40_RS03565at 708.784 kb on + strand, within ABIE40_RS03565at 708.785 kb on - strand, within ABIE40_RS03565at 708.785 kb on - strand, within ABIE40_RS03565at 708.785 kb on - strand, within ABIE40_RS03565at 708.785 kb on - strand, within ABIE40_RS03565at 708.785 kb on - strand, within ABIE40_RS03565at 708.901 kb on + strand, within ABIE40_RS03565at 708.901 kb on + strand, within ABIE40_RS03565at 708.901 kb on + strand, within ABIE40_RS03565at 708.901 kb on + strand, within ABIE40_RS03565at 708.901 kb on + strand, within ABIE40_RS03565at 708.902 kb on - strand, within ABIE40_RS03565at 708.946 kb on + strand, within ABIE40_RS03565at 708.946 kb on + strand, within ABIE40_RS03565at 708.947 kb on - strand, within ABIE40_RS03565at 708.947 kb on - strand, within ABIE40_RS03565at 708.947 kb on - strand, within ABIE40_RS03565at 709.141 kb on + strand, within ABIE40_RS03565at 709.142 kb on - strand, within ABIE40_RS03565at 709.383 kb on - strand, within ABIE40_RS03565at 709.383 kb on - strand, within ABIE40_RS03565at 709.391 kb on + strand, within ABIE40_RS03565at 709.391 kb on + strand, within ABIE40_RS03565at 709.391 kb on + strand, within ABIE40_RS03565at 709.391 kb on + strand, within ABIE40_RS03565at 709.391 kb on + strand, within ABIE40_RS03565at 709.391 kb on + strand, within ABIE40_RS03565at 709.391 kb on + strand, within ABIE40_RS03565at 709.393 kb on + strand, within ABIE40_RS03565at 709.457 kb on - strand, within ABIE40_RS03565at 709.486 kb on + strand, within ABIE40_RS03565at 709.487 kb on - strand, within ABIE40_RS03565at 709.487 kb on - strand, within ABIE40_RS03565

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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706,371 - ABIE40_RS03555 0.33 -3.2
706,407 + ABIE40_RS03555 0.36 -2.8
706,620 - ABIE40_RS03555 0.50 -4.9
706,620 - ABIE40_RS03555 0.50 -3.7
706,620 - ABIE40_RS03555 0.50 -3.1
706,620 - ABIE40_RS03555 0.50 -3.9
706,941 + ABIE40_RS03555 0.73 -1.0
706,941 + ABIE40_RS03555 0.73 -2.9
706,942 - ABIE40_RS03555 0.73 -2.7
706,983 + ABIE40_RS03555 0.76 -1.8
706,983 + ABIE40_RS03555 0.76 -3.1
706,983 + ABIE40_RS03555 0.76 -5.2
706,983 + ABIE40_RS03555 0.76 -3.1
706,983 + ABIE40_RS03555 0.76 -0.8
706,983 + ABIE40_RS03555 0.76 -4.0
706,983 + ABIE40_RS03555 0.76 -3.0
706,984 - ABIE40_RS03555 0.76 +1.6
706,984 - ABIE40_RS03555 0.76 -1.8
706,984 - ABIE40_RS03555 0.76 -5.6
707,019 + ABIE40_RS03555 0.78 -3.9
707,135 + ABIE40_RS03555 0.86 -4.3
707,136 - ABIE40_RS03555 0.86 -4.3
707,136 - ABIE40_RS03555 0.86 -1.8
707,136 - ABIE40_RS03555 0.86 -1.9
707,223 + -1.4
707,223 + -1.1
707,223 + -5.1
707,224 - -3.2
707,412 + -2.2
707,502 + ABIE40_RS03560 0.14 -4.7
707,503 - ABIE40_RS03560 0.14 -1.0
707,504 + ABIE40_RS03560 0.14 -2.7
707,504 + ABIE40_RS03560 0.14 -3.1
707,504 + ABIE40_RS03560 0.14 -3.0
707,504 + ABIE40_RS03560 0.14 -2.0
708,181 - ABIE40_RS03560 0.71 -3.4
708,181 - ABIE40_RS03560 0.71 -2.3
708,181 - ABIE40_RS03560 0.71 -1.8
708,181 - ABIE40_RS03560 0.71 -1.6
708,181 - ABIE40_RS03560 0.71 -3.9
708,288 + ABIE40_RS03560 0.80 -4.1
708,289 - ABIE40_RS03560 0.80 -1.9
708,289 - ABIE40_RS03560 0.80 -3.8
708,289 - ABIE40_RS03560 0.80 -4.6
708,291 + ABIE40_RS03560 0.80 -3.5
708,291 + ABIE40_RS03560 0.80 -2.8
708,291 + ABIE40_RS03560 0.80 -3.5
708,291 + ABIE40_RS03560 0.80 -5.8
708,291 + ABIE40_RS03560 0.80 -4.0
708,291 + ABIE40_RS03560 0.80 -1.4
708,291 + ABIE40_RS03560 0.80 -2.6
708,292 - ABIE40_RS03560 0.80 -4.1
708,292 - ABIE40_RS03560 0.80 -2.1
708,292 - ABIE40_RS03560 0.80 -2.5
708,506 - -2.4
708,551 + -1.9
708,551 + -2.9
708,551 + -2.1
708,551 + -2.7
708,551 + -2.6
708,552 - -1.9
708,552 - -3.5
708,552 - -4.4
708,739 + -1.4
708,739 + -2.3
708,740 - -3.1
708,740 - -0.3
708,740 - -3.1
708,784 + ABIE40_RS03565 0.12 -3.2
708,784 + ABIE40_RS03565 0.12 -3.2
708,784 + ABIE40_RS03565 0.12 -1.6
708,785 - ABIE40_RS03565 0.12 -4.3
708,785 - ABIE40_RS03565 0.12 -1.2
708,785 - ABIE40_RS03565 0.12 -3.2
708,785 - ABIE40_RS03565 0.12 -3.0
708,785 - ABIE40_RS03565 0.12 -1.0
708,901 + ABIE40_RS03565 0.21 -3.5
708,901 + ABIE40_RS03565 0.21 -1.6
708,901 + ABIE40_RS03565 0.21 -1.2
708,901 + ABIE40_RS03565 0.21 -0.8
708,901 + ABIE40_RS03565 0.21 -1.6
708,902 - ABIE40_RS03565 0.21 -2.0
708,946 + ABIE40_RS03565 0.24 -3.2
708,946 + ABIE40_RS03565 0.24 -3.8
708,947 - ABIE40_RS03565 0.24 -4.0
708,947 - ABIE40_RS03565 0.24 -1.6
708,947 - ABIE40_RS03565 0.24 -1.2
709,141 + ABIE40_RS03565 0.39 -4.1
709,142 - ABIE40_RS03565 0.39 -3.1
709,383 - ABIE40_RS03565 0.58 -4.3
709,383 - ABIE40_RS03565 0.58 -1.6
709,391 + ABIE40_RS03565 0.58 -2.1
709,391 + ABIE40_RS03565 0.58 -2.9
709,391 + ABIE40_RS03565 0.58 -3.0
709,391 + ABIE40_RS03565 0.58 -3.4
709,391 + ABIE40_RS03565 0.58 -3.1
709,391 + ABIE40_RS03565 0.58 -3.6
709,391 + ABIE40_RS03565 0.58 -3.0
709,393 + ABIE40_RS03565 0.58 -4.5
709,457 - ABIE40_RS03565 0.63 -3.7
709,486 + ABIE40_RS03565 0.65 -1.6
709,487 - ABIE40_RS03565 0.66 -0.0
709,487 - ABIE40_RS03565 0.66 -4.1

Or see this region's nucleotide sequence