Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15300

Experiment: L-Phenylalanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS15295 and ABID97_RS15300 are separated by 125 nucleotidesABID97_RS15300 and ABID97_RS15305 are separated by 90 nucleotides ABID97_RS15295: ABID97_RS15295 - hypothetical protein, at 3,164,746 to 3,165,702 _RS15295 ABID97_RS15300: ABID97_RS15300 - tRNA-Asn, at 3,165,828 to 3,165,903 _RS15300 ABID97_RS15305: ABID97_RS15305 - TonB-dependent siderophore receptor, at 3,165,994 to 3,168,150 _RS15305 Position (kb) 3165 3166Strain fitness (log2 ratio) -1 0 1 2at 3164.971 kb on + strand, within ABID97_RS15295at 3164.972 kb on - strand, within ABID97_RS15295at 3165.022 kb on + strand, within ABID97_RS15295at 3165.023 kb on - strand, within ABID97_RS15295at 3165.117 kb on - strand, within ABID97_RS15295at 3165.170 kb on + strand, within ABID97_RS15295at 3165.170 kb on + strand, within ABID97_RS15295at 3165.170 kb on + strand, within ABID97_RS15295at 3165.170 kb on + strand, within ABID97_RS15295at 3165.170 kb on + strand, within ABID97_RS15295at 3165.171 kb on - strand, within ABID97_RS15295at 3165.171 kb on - strand, within ABID97_RS15295at 3165.172 kb on + strand, within ABID97_RS15295at 3165.173 kb on - strand, within ABID97_RS15295at 3165.173 kb on - strand, within ABID97_RS15295at 3165.330 kb on + strand, within ABID97_RS15295at 3165.360 kb on - strand, within ABID97_RS15295at 3165.360 kb on - strand, within ABID97_RS15295at 3165.362 kb on + strand, within ABID97_RS15295at 3165.482 kb on + strand, within ABID97_RS15295at 3165.482 kb on + strand, within ABID97_RS15295at 3165.482 kb on + strand, within ABID97_RS15295at 3165.482 kb on + strand, within ABID97_RS15295at 3165.482 kb on + strand, within ABID97_RS15295at 3165.483 kb on - strand, within ABID97_RS15295at 3165.483 kb on - strand, within ABID97_RS15295at 3165.483 kb on - strand, within ABID97_RS15295at 3165.483 kb on - strand, within ABID97_RS15295at 3165.483 kb on - strand, within ABID97_RS15295at 3165.483 kb on - strand, within ABID97_RS15295at 3165.484 kb on + strand, within ABID97_RS15295at 3165.601 kb on + strand, within ABID97_RS15295at 3165.601 kb on + strand, within ABID97_RS15295at 3165.601 kb on + strand, within ABID97_RS15295at 3165.602 kb on - strand, within ABID97_RS15295at 3165.602 kb on - strand, within ABID97_RS15295at 3165.773 kb on - strandat 3166.050 kb on - strandat 3166.718 kb on + strand, within ABID97_RS15305at 3166.718 kb on + strand, within ABID97_RS15305at 3166.719 kb on - strand, within ABID97_RS15305at 3166.757 kb on + strand, within ABID97_RS15305

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
remove
3,164,971 + ABID97_RS15295 0.24 -0.1
3,164,972 - ABID97_RS15295 0.24 -0.2
3,165,022 + ABID97_RS15295 0.29 +0.2
3,165,023 - ABID97_RS15295 0.29 -0.1
3,165,117 - ABID97_RS15295 0.39 -0.1
3,165,170 + ABID97_RS15295 0.44 +0.1
3,165,170 + ABID97_RS15295 0.44 +1.7
3,165,170 + ABID97_RS15295 0.44 -0.2
3,165,170 + ABID97_RS15295 0.44 +0.1
3,165,170 + ABID97_RS15295 0.44 +0.1
3,165,171 - ABID97_RS15295 0.44 -0.4
3,165,171 - ABID97_RS15295 0.44 -0.4
3,165,172 + ABID97_RS15295 0.45 -0.6
3,165,173 - ABID97_RS15295 0.45 +0.5
3,165,173 - ABID97_RS15295 0.45 -0.7
3,165,330 + ABID97_RS15295 0.61 +0.0
3,165,360 - ABID97_RS15295 0.64 -0.3
3,165,360 - ABID97_RS15295 0.64 -0.0
3,165,362 + ABID97_RS15295 0.64 -0.9
3,165,482 + ABID97_RS15295 0.77 -0.2
3,165,482 + ABID97_RS15295 0.77 -0.3
3,165,482 + ABID97_RS15295 0.77 +0.5
3,165,482 + ABID97_RS15295 0.77 -0.1
3,165,482 + ABID97_RS15295 0.77 -0.4
3,165,483 - ABID97_RS15295 0.77 -1.0
3,165,483 - ABID97_RS15295 0.77 +0.3
3,165,483 - ABID97_RS15295 0.77 -1.0
3,165,483 - ABID97_RS15295 0.77 +0.1
3,165,483 - ABID97_RS15295 0.77 -0.3
3,165,483 - ABID97_RS15295 0.77 +2.7
3,165,484 + ABID97_RS15295 0.77 +0.6
3,165,601 + ABID97_RS15295 0.89 -0.1
3,165,601 + ABID97_RS15295 0.89 -0.5
3,165,601 + ABID97_RS15295 0.89 -0.2
3,165,602 - ABID97_RS15295 0.89 -0.6
3,165,602 - ABID97_RS15295 0.89 -0.5
3,165,773 - -0.1
3,166,050 - +0.1
3,166,718 + ABID97_RS15305 0.34 +0.3
3,166,718 + ABID97_RS15305 0.34 -0.2
3,166,719 - ABID97_RS15305 0.34 -0.1
3,166,757 + ABID97_RS15305 0.35 -0.3

Or see this region's nucleotide sequence