Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_266

Experiment: Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_265 and PfGW456L13_266 are separated by 4 nucleotidesPfGW456L13_266 and PfGW456L13_267 are separated by 8 nucleotidesPfGW456L13_267 and PfGW456L13_268 are separated by 4 nucleotides PfGW456L13_265 - General secretion pathway protein E, at 307,299 to 308,771 _265 PfGW456L13_266 - General secretion pathway protein D, at 308,776 to 310,695 _266 PfGW456L13_267 - hypothetical protein, at 310,704 to 311,246 _267 PfGW456L13_268 - Cytochrome B561, at 311,251 to 311,814 _268 Position (kb) 308 309 310 311Strain fitness (log2 ratio) -2 -1 0 1at 307.919 kb on - strand, within PfGW456L13_265at 307.919 kb on - strand, within PfGW456L13_265at 307.985 kb on - strand, within PfGW456L13_265at 308.033 kb on + strand, within PfGW456L13_265at 308.034 kb on - strandat 308.345 kb on + strand, within PfGW456L13_265at 308.346 kb on - strand, within PfGW456L13_265at 308.359 kb on + strand, within PfGW456L13_265at 308.359 kb on + strand, within PfGW456L13_265at 308.360 kb on - strand, within PfGW456L13_265at 308.590 kb on + strand, within PfGW456L13_265at 308.590 kb on + strand, within PfGW456L13_265at 308.675 kb on + strandat 308.675 kb on + strandat 308.676 kb on - strandat 308.909 kb on + strandat 308.910 kb on - strandat 308.910 kb on - strandat 308.943 kb on + strandat 309.029 kb on + strand, within PfGW456L13_266at 309.230 kb on - strand, within PfGW456L13_266at 309.251 kb on + strand, within PfGW456L13_266at 309.251 kb on + strand, within PfGW456L13_266at 309.251 kb on + strand, within PfGW456L13_266at 309.251 kb on + strand, within PfGW456L13_266at 309.251 kb on + strand, within PfGW456L13_266at 309.251 kb on + strand, within PfGW456L13_266at 309.251 kb on + strand, within PfGW456L13_266at 309.251 kb on + strand, within PfGW456L13_266at 309.251 kb on + strand, within PfGW456L13_266at 309.251 kb on + strand, within PfGW456L13_266at 309.251 kb on + strand, within PfGW456L13_266at 309.251 kb on + strand, within PfGW456L13_266at 309.252 kb on - strand, within PfGW456L13_266at 309.252 kb on - strand, within PfGW456L13_266at 309.252 kb on - strand, within PfGW456L13_266at 309.252 kb on - strand, within PfGW456L13_266at 309.252 kb on - strand, within PfGW456L13_266at 309.252 kb on - strand, within PfGW456L13_266at 309.252 kb on - strand, within PfGW456L13_266at 309.252 kb on - strand, within PfGW456L13_266at 309.335 kb on + strand, within PfGW456L13_266at 309.335 kb on + strand, within PfGW456L13_266at 309.336 kb on - strand, within PfGW456L13_266at 309.336 kb on - strand, within PfGW456L13_266at 309.930 kb on + strand, within PfGW456L13_266at 310.024 kb on + strand, within PfGW456L13_266at 310.024 kb on + strand, within PfGW456L13_266at 310.024 kb on + strand, within PfGW456L13_266at 310.168 kb on - strand, within PfGW456L13_266at 310.168 kb on - strand, within PfGW456L13_266at 310.168 kb on - strand, within PfGW456L13_266at 310.226 kb on + strand, within PfGW456L13_266at 310.226 kb on + strand, within PfGW456L13_266at 310.227 kb on - strand, within PfGW456L13_266at 310.227 kb on - strand, within PfGW456L13_266at 310.227 kb on - strand, within PfGW456L13_266at 310.333 kb on + strand, within PfGW456L13_266at 310.410 kb on + strand, within PfGW456L13_266at 310.411 kb on - strand, within PfGW456L13_266at 310.436 kb on + strand, within PfGW456L13_266at 310.436 kb on + strand, within PfGW456L13_266at 310.689 kb on + strandat 310.689 kb on + strandat 310.689 kb on + strandat 310.689 kb on + strandat 310.689 kb on + strandat 310.689 kb on + strandat 310.689 kb on + strandat 310.690 kb on - strandat 310.690 kb on - strandat 310.690 kb on - strandat 310.912 kb on + strand, within PfGW456L13_267at 310.912 kb on + strand, within PfGW456L13_267at 310.913 kb on - strand, within PfGW456L13_267at 311.164 kb on + strand, within PfGW456L13_267at 311.383 kb on + strand, within PfGW456L13_268at 311.383 kb on + strand, within PfGW456L13_268at 311.383 kb on + strand, within PfGW456L13_268at 311.383 kb on + strand, within PfGW456L13_268at 311.383 kb on + strand, within PfGW456L13_268at 311.383 kb on + strand, within PfGW456L13_268at 311.384 kb on - strand, within PfGW456L13_268at 311.384 kb on - strand, within PfGW456L13_268at 311.384 kb on - strand, within PfGW456L13_268at 311.384 kb on - strand, within PfGW456L13_268at 311.384 kb on - strand, within PfGW456L13_268at 311.461 kb on + strand, within PfGW456L13_268at 311.461 kb on + strand, within PfGW456L13_268at 311.462 kb on - strand, within PfGW456L13_268at 311.462 kb on - strand, within PfGW456L13_268at 311.522 kb on + strand, within PfGW456L13_268at 311.523 kb on - strand, within PfGW456L13_268at 311.523 kb on - strand, within PfGW456L13_268at 311.523 kb on - strand, within PfGW456L13_268at 311.592 kb on + strand, within PfGW456L13_268at 311.624 kb on + strand, within PfGW456L13_268at 311.625 kb on - strand, within PfGW456L13_268

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.002 mg/ml
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307,919 - PfGW456L13_265 0.42 +0.2
307,919 - PfGW456L13_265 0.42 +0.3
307,985 - PfGW456L13_265 0.47 +1.2
308,033 + PfGW456L13_265 0.50 -0.1
308,034 - +1.2
308,345 + PfGW456L13_265 0.71 +0.2
308,346 - PfGW456L13_265 0.71 -0.0
308,359 + PfGW456L13_265 0.72 +1.2
308,359 + PfGW456L13_265 0.72 +0.0
308,360 - PfGW456L13_265 0.72 -0.2
308,590 + PfGW456L13_265 0.88 -0.8
308,590 + PfGW456L13_265 0.88 +0.2
308,675 + +0.2
308,675 + +0.5
308,676 - +0.5
308,909 + +0.3
308,910 - +0.2
308,910 - -0.1
308,943 + +0.8
309,029 + PfGW456L13_266 0.13 -0.2
309,230 - PfGW456L13_266 0.24 -0.6
309,251 + PfGW456L13_266 0.25 +0.2
309,251 + PfGW456L13_266 0.25 +0.6
309,251 + PfGW456L13_266 0.25 +0.2
309,251 + PfGW456L13_266 0.25 +0.6
309,251 + PfGW456L13_266 0.25 -0.4
309,251 + PfGW456L13_266 0.25 -0.2
309,251 + PfGW456L13_266 0.25 +0.1
309,251 + PfGW456L13_266 0.25 -0.7
309,251 + PfGW456L13_266 0.25 +0.8
309,251 + PfGW456L13_266 0.25 -0.0
309,251 + PfGW456L13_266 0.25 +0.0
309,251 + PfGW456L13_266 0.25 -2.0
309,252 - PfGW456L13_266 0.25 +0.4
309,252 - PfGW456L13_266 0.25 -0.5
309,252 - PfGW456L13_266 0.25 +0.3
309,252 - PfGW456L13_266 0.25 -0.5
309,252 - PfGW456L13_266 0.25 -0.2
309,252 - PfGW456L13_266 0.25 +0.3
309,252 - PfGW456L13_266 0.25 -0.5
309,252 - PfGW456L13_266 0.25 -0.2
309,335 + PfGW456L13_266 0.29 +0.1
309,335 + PfGW456L13_266 0.29 -0.1
309,336 - PfGW456L13_266 0.29 +0.2
309,336 - PfGW456L13_266 0.29 -1.1
309,930 + PfGW456L13_266 0.60 +1.2
310,024 + PfGW456L13_266 0.65 +0.7
310,024 + PfGW456L13_266 0.65 -0.2
310,024 + PfGW456L13_266 0.65 -0.2
310,168 - PfGW456L13_266 0.72 -1.2
310,168 - PfGW456L13_266 0.72 -0.5
310,168 - PfGW456L13_266 0.72 +0.5
310,226 + PfGW456L13_266 0.76 +0.2
310,226 + PfGW456L13_266 0.76 -0.9
310,227 - PfGW456L13_266 0.76 -0.4
310,227 - PfGW456L13_266 0.76 -0.5
310,227 - PfGW456L13_266 0.76 -0.1
310,333 + PfGW456L13_266 0.81 +0.0
310,410 + PfGW456L13_266 0.85 -1.1
310,411 - PfGW456L13_266 0.85 -0.1
310,436 + PfGW456L13_266 0.86 -0.2
310,436 + PfGW456L13_266 0.86 +0.1
310,689 + -0.1
310,689 + +0.3
310,689 + +1.0
310,689 + +0.2
310,689 + +0.6
310,689 + -0.5
310,689 + -0.1
310,690 - +0.5
310,690 - -0.7
310,690 - -0.0
310,912 + PfGW456L13_267 0.38 -0.6
310,912 + PfGW456L13_267 0.38 +1.0
310,913 - PfGW456L13_267 0.38 +0.3
311,164 + PfGW456L13_267 0.85 +0.6
311,383 + PfGW456L13_268 0.23 +0.3
311,383 + PfGW456L13_268 0.23 -0.3
311,383 + PfGW456L13_268 0.23 +0.3
311,383 + PfGW456L13_268 0.23 -0.7
311,383 + PfGW456L13_268 0.23 +1.4
311,383 + PfGW456L13_268 0.23 -0.2
311,384 - PfGW456L13_268 0.24 -0.7
311,384 - PfGW456L13_268 0.24 +1.2
311,384 - PfGW456L13_268 0.24 -0.1
311,384 - PfGW456L13_268 0.24 -0.5
311,384 - PfGW456L13_268 0.24 +0.4
311,461 + PfGW456L13_268 0.37 +0.1
311,461 + PfGW456L13_268 0.37 +0.4
311,462 - PfGW456L13_268 0.37 +0.3
311,462 - PfGW456L13_268 0.37 -0.2
311,522 + PfGW456L13_268 0.48 -1.8
311,523 - PfGW456L13_268 0.48 +0.5
311,523 - PfGW456L13_268 0.48 +0.1
311,523 - PfGW456L13_268 0.48 -0.1
311,592 + PfGW456L13_268 0.60 +0.0
311,624 + PfGW456L13_268 0.66 -1.1
311,625 - PfGW456L13_268 0.66 +0.1

Or see this region's nucleotide sequence