Strain Fitness in Pseudomonas sp. S08-1 around OH686_20895

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_20890 and OH686_20895 are separated by 157 nucleotidesOH686_20895 and OH686_20900 are separated by 33 nucleotidesOH686_20900 and OH686_20905 are separated by 82 nucleotides OH686_20890: OH686_20890 - ribosomal protein S1, at 4,271,784 to 4,273,463 _20890 OH686_20895: OH686_20895 - integration host factor, beta subunit, at 4,273,621 to 4,273,905 _20895 OH686_20900: OH686_20900 - hypothetical protein, at 4,273,939 to 4,274,184 _20900 OH686_20905: OH686_20905 - UDP-glucose 4-epimerase , at 4,274,267 to 4,275,232 _20905 Position (kb) 4273 4274Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4273.113 kb on + strand, within OH686_20890at 4273.461 kb on + strandat 4273.461 kb on + strandat 4273.461 kb on + strandat 4273.461 kb on + strandat 4273.461 kb on + strandat 4273.461 kb on + strandat 4273.461 kb on + strandat 4273.515 kb on + strandat 4273.525 kb on + strandat 4273.525 kb on + strandat 4273.525 kb on + strandat 4273.526 kb on - strandat 4273.526 kb on - strandat 4273.526 kb on - strandat 4273.572 kb on + strandat 4273.582 kb on + strandat 4273.586 kb on - strandat 4273.586 kb on - strandat 4273.586 kb on - strandat 4273.649 kb on + strandat 4273.649 kb on + strandat 4273.649 kb on + strandat 4273.649 kb on + strandat 4273.649 kb on + strandat 4273.649 kb on + strandat 4273.649 kb on + strandat 4273.650 kb on - strand, within OH686_20895at 4273.650 kb on - strand, within OH686_20895at 4273.650 kb on - strand, within OH686_20895at 4273.650 kb on - strand, within OH686_20895at 4273.650 kb on - strand, within OH686_20895at 4273.650 kb on - strand, within OH686_20895at 4273.650 kb on - strand, within OH686_20895at 4273.806 kb on + strand, within OH686_20895at 4273.829 kb on + strand, within OH686_20895at 4273.829 kb on + strand, within OH686_20895at 4273.938 kb on + strandat 4273.938 kb on + strandat 4273.938 kb on + strandat 4273.939 kb on - strandat 4273.939 kb on - strandat 4273.953 kb on + strandat 4273.953 kb on + strandat 4273.953 kb on + strandat 4273.954 kb on - strandat 4273.994 kb on + strand, within OH686_20900at 4273.994 kb on + strand, within OH686_20900at 4273.994 kb on + strand, within OH686_20900at 4273.995 kb on - strand, within OH686_20900at 4274.048 kb on + strand, within OH686_20900at 4274.049 kb on - strand, within OH686_20900at 4274.049 kb on - strand, within OH686_20900at 4274.049 kb on - strand, within OH686_20900at 4274.049 kb on - strand, within OH686_20900at 4274.069 kb on + strand, within OH686_20900at 4274.070 kb on - strand, within OH686_20900at 4274.070 kb on - strand, within OH686_20900at 4274.189 kb on + strandat 4274.189 kb on + strandat 4274.190 kb on - strandat 4274.190 kb on - strandat 4274.304 kb on + strandat 4274.304 kb on + strandat 4274.305 kb on - strandat 4274.305 kb on - strandat 4274.305 kb on - strandat 4274.305 kb on - strandat 4274.305 kb on - strandat 4274.329 kb on + strandat 4274.330 kb on - strandat 4274.330 kb on - strandat 4274.330 kb on - strandat 4274.373 kb on + strand, within OH686_20905at 4274.373 kb on + strand, within OH686_20905at 4274.378 kb on + strand, within OH686_20905at 4274.378 kb on + strand, within OH686_20905at 4274.378 kb on + strand, within OH686_20905at 4274.378 kb on + strand, within OH686_20905at 4274.378 kb on + strand, within OH686_20905at 4274.379 kb on - strand, within OH686_20905at 4274.379 kb on - strand, within OH686_20905at 4274.379 kb on - strand, within OH686_20905at 4274.379 kb on - strand, within OH686_20905at 4274.392 kb on + strand, within OH686_20905at 4274.415 kb on + strand, within OH686_20905at 4274.415 kb on + strand, within OH686_20905at 4274.415 kb on + strand, within OH686_20905at 4274.415 kb on + strand, within OH686_20905at 4274.415 kb on + strand, within OH686_20905at 4274.415 kb on + strand, within OH686_20905at 4274.415 kb on + strand, within OH686_20905at 4274.416 kb on - strand, within OH686_20905at 4274.419 kb on + strand, within OH686_20905at 4274.420 kb on - strand, within OH686_20905at 4274.454 kb on + strand, within OH686_20905at 4274.454 kb on + strand, within OH686_20905at 4274.454 kb on + strand, within OH686_20905at 4274.454 kb on + strand, within OH686_20905at 4274.454 kb on + strand, within OH686_20905at 4274.454 kb on + strand, within OH686_20905at 4274.455 kb on - strand, within OH686_20905at 4274.463 kb on + strand, within OH686_20905at 4274.463 kb on + strand, within OH686_20905at 4274.463 kb on + strand, within OH686_20905at 4274.463 kb on + strand, within OH686_20905at 4274.463 kb on + strand, within OH686_20905at 4274.463 kb on + strand, within OH686_20905at 4274.463 kb on + strand, within OH686_20905at 4274.463 kb on + strand, within OH686_20905at 4274.464 kb on - strand, within OH686_20905at 4274.464 kb on - strand, within OH686_20905at 4274.650 kb on + strand, within OH686_20905at 4274.651 kb on - strand, within OH686_20905at 4274.766 kb on + strand, within OH686_20905at 4274.766 kb on + strand, within OH686_20905at 4274.766 kb on + strand, within OH686_20905at 4274.766 kb on + strand, within OH686_20905at 4274.766 kb on + strand, within OH686_20905at 4274.766 kb on + strand, within OH686_20905at 4274.766 kb on + strand, within OH686_20905at 4274.766 kb on + strand, within OH686_20905at 4274.766 kb on + strand, within OH686_20905at 4274.767 kb on - strand, within OH686_20905at 4274.767 kb on - strand, within OH686_20905at 4274.767 kb on - strand, within OH686_20905at 4274.769 kb on + strand, within OH686_20905at 4274.769 kb on + strand, within OH686_20905at 4274.769 kb on + strand, within OH686_20905at 4274.769 kb on + strand, within OH686_20905at 4274.770 kb on - strand, within OH686_20905at 4274.770 kb on - strand, within OH686_20905at 4274.770 kb on - strand, within OH686_20905at 4274.770 kb on - strand, within OH686_20905at 4274.770 kb on - strand, within OH686_20905at 4274.770 kb on - strand, within OH686_20905at 4274.881 kb on + strand, within OH686_20905at 4274.881 kb on + strand, within OH686_20905at 4274.882 kb on - strand, within OH686_20905at 4274.882 kb on - strand, within OH686_20905

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,273,113 + OH686_20890 0.79 +0.8
4,273,461 + +1.1
4,273,461 + -1.5
4,273,461 + +0.6
4,273,461 + +0.1
4,273,461 + -0.1
4,273,461 + +0.5
4,273,461 + +1.5
4,273,515 + +1.0
4,273,525 + +0.6
4,273,525 + +0.4
4,273,525 + -0.6
4,273,526 - +0.1
4,273,526 - -0.8
4,273,526 - -0.2
4,273,572 + +0.7
4,273,582 + -1.0
4,273,586 - -0.5
4,273,586 - +0.8
4,273,586 - -0.8
4,273,649 + -0.8
4,273,649 + -1.3
4,273,649 + +0.2
4,273,649 + -0.2
4,273,649 + +0.8
4,273,649 + +1.0
4,273,649 + -0.8
4,273,650 - OH686_20895 0.10 -2.2
4,273,650 - OH686_20895 0.10 -2.7
4,273,650 - OH686_20895 0.10 -0.5
4,273,650 - OH686_20895 0.10 -0.8
4,273,650 - OH686_20895 0.10 -1.5
4,273,650 - OH686_20895 0.10 -0.5
4,273,650 - OH686_20895 0.10 -0.8
4,273,806 + OH686_20895 0.65 -0.2
4,273,829 + OH686_20895 0.73 -0.0
4,273,829 + OH686_20895 0.73 -1.3
4,273,938 + +0.4
4,273,938 + +0.3
4,273,938 + -0.6
4,273,939 - +0.1
4,273,939 - -0.1
4,273,953 + +0.8
4,273,953 + -0.8
4,273,953 + -1.4
4,273,954 - -0.2
4,273,994 + OH686_20900 0.22 +0.1
4,273,994 + OH686_20900 0.22 +0.1
4,273,994 + OH686_20900 0.22 +0.4
4,273,995 - OH686_20900 0.23 -0.9
4,274,048 + OH686_20900 0.44 -0.2
4,274,049 - OH686_20900 0.45 +0.5
4,274,049 - OH686_20900 0.45 +0.5
4,274,049 - OH686_20900 0.45 -0.8
4,274,049 - OH686_20900 0.45 -0.8
4,274,069 + OH686_20900 0.53 -1.0
4,274,070 - OH686_20900 0.53 -0.6
4,274,070 - OH686_20900 0.53 +1.7
4,274,189 + -1.0
4,274,189 + +1.7
4,274,190 - +0.1
4,274,190 - -0.5
4,274,304 + -0.1
4,274,304 + -0.8
4,274,305 - +0.7
4,274,305 - +0.1
4,274,305 - +0.2
4,274,305 - -0.4
4,274,305 - +0.5
4,274,329 + -0.7
4,274,330 - -1.6
4,274,330 - -0.9
4,274,330 - +1.7
4,274,373 + OH686_20905 0.11 +0.2
4,274,373 + OH686_20905 0.11 -0.1
4,274,378 + OH686_20905 0.11 +0.2
4,274,378 + OH686_20905 0.11 -0.5
4,274,378 + OH686_20905 0.11 -0.5
4,274,378 + OH686_20905 0.11 -0.0
4,274,378 + OH686_20905 0.11 -1.2
4,274,379 - OH686_20905 0.12 -2.3
4,274,379 - OH686_20905 0.12 +1.9
4,274,379 - OH686_20905 0.12 -0.5
4,274,379 - OH686_20905 0.12 -0.2
4,274,392 + OH686_20905 0.13 +0.6
4,274,415 + OH686_20905 0.15 -0.6
4,274,415 + OH686_20905 0.15 -0.7
4,274,415 + OH686_20905 0.15 +0.4
4,274,415 + OH686_20905 0.15 -1.9
4,274,415 + OH686_20905 0.15 +0.8
4,274,415 + OH686_20905 0.15 -0.3
4,274,415 + OH686_20905 0.15 +0.1
4,274,416 - OH686_20905 0.15 -0.3
4,274,419 + OH686_20905 0.16 -0.4
4,274,420 - OH686_20905 0.16 -1.0
4,274,454 + OH686_20905 0.19 -0.4
4,274,454 + OH686_20905 0.19 -2.8
4,274,454 + OH686_20905 0.19 -0.7
4,274,454 + OH686_20905 0.19 +0.6
4,274,454 + OH686_20905 0.19 +0.8
4,274,454 + OH686_20905 0.19 +0.1
4,274,455 - OH686_20905 0.19 -1.5
4,274,463 + OH686_20905 0.20 +0.8
4,274,463 + OH686_20905 0.20 -1.2
4,274,463 + OH686_20905 0.20 -1.2
4,274,463 + OH686_20905 0.20 +1.3
4,274,463 + OH686_20905 0.20 -0.3
4,274,463 + OH686_20905 0.20 +0.1
4,274,463 + OH686_20905 0.20 -0.1
4,274,463 + OH686_20905 0.20 -0.8
4,274,464 - OH686_20905 0.20 -0.7
4,274,464 - OH686_20905 0.20 -1.3
4,274,650 + OH686_20905 0.40 -1.3
4,274,651 - OH686_20905 0.40 -1.6
4,274,766 + OH686_20905 0.52 -0.2
4,274,766 + OH686_20905 0.52 -1.1
4,274,766 + OH686_20905 0.52 -0.1
4,274,766 + OH686_20905 0.52 -0.3
4,274,766 + OH686_20905 0.52 -0.6
4,274,766 + OH686_20905 0.52 -0.2
4,274,766 + OH686_20905 0.52 -0.6
4,274,766 + OH686_20905 0.52 +0.2
4,274,766 + OH686_20905 0.52 -0.8
4,274,767 - OH686_20905 0.52 -0.3
4,274,767 - OH686_20905 0.52 +0.5
4,274,767 - OH686_20905 0.52 -0.2
4,274,769 + OH686_20905 0.52 -0.3
4,274,769 + OH686_20905 0.52 +0.7
4,274,769 + OH686_20905 0.52 +0.2
4,274,769 + OH686_20905 0.52 -1.2
4,274,770 - OH686_20905 0.52 -0.1
4,274,770 - OH686_20905 0.52 +0.4
4,274,770 - OH686_20905 0.52 -0.8
4,274,770 - OH686_20905 0.52 +0.8
4,274,770 - OH686_20905 0.52 +2.8
4,274,770 - OH686_20905 0.52 +4.8
4,274,881 + OH686_20905 0.64 -0.2
4,274,881 + OH686_20905 0.64 -0.9
4,274,882 - OH686_20905 0.64 +3.4
4,274,882 - OH686_20905 0.64 +0.1

Or see this region's nucleotide sequence