Strain Fitness in Pseudomonas sp. S08-1 around OH686_03710

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03705 and OH686_03710 are separated by 1 nucleotidesOH686_03710 and OH686_03715 are separated by 307 nucleotidesOH686_03715 and OH686_03720 are separated by 3 nucleotides OH686_03705: OH686_03705 - sigma-54-dependent transcriptional regulator, at 765,963 to 767,804 _03705 OH686_03710: OH686_03710 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 767,806 to 769,698 _03710 OH686_03715: OH686_03715 - Peptidylprolyl isomerase, FKBP-type , at 770,006 to 770,419 _03715 OH686_03720: OH686_03720 - Permease of the drug/metabolite transporter (DMT) superfamily, at 770,423 to 771,313 _03720 Position (kb) 767 768 769 770Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 766.892 kb on + strand, within OH686_03705at 766.927 kb on + strand, within OH686_03705at 767.109 kb on + strand, within OH686_03705at 767.370 kb on + strand, within OH686_03705at 767.370 kb on + strand, within OH686_03705at 767.371 kb on - strand, within OH686_03705at 767.371 kb on - strand, within OH686_03705at 767.371 kb on - strand, within OH686_03705at 767.371 kb on - strand, within OH686_03705at 767.371 kb on - strand, within OH686_03705at 767.371 kb on - strand, within OH686_03705at 767.374 kb on - strand, within OH686_03705at 767.374 kb on - strand, within OH686_03705at 767.769 kb on + strandat 767.769 kb on + strandat 767.769 kb on + strandat 767.769 kb on + strandat 767.769 kb on + strandat 767.769 kb on + strandat 767.769 kb on + strandat 767.769 kb on + strandat 767.770 kb on - strandat 767.770 kb on - strandat 767.770 kb on - strandat 767.770 kb on - strandat 767.807 kb on + strandat 767.807 kb on + strandat 767.807 kb on + strandat 767.807 kb on + strandat 767.807 kb on + strandat 767.912 kb on - strandat 768.080 kb on + strand, within OH686_03710at 768.081 kb on - strand, within OH686_03710at 768.081 kb on - strand, within OH686_03710at 768.081 kb on - strand, within OH686_03710at 768.496 kb on + strand, within OH686_03710at 768.496 kb on + strand, within OH686_03710at 768.496 kb on + strand, within OH686_03710at 768.496 kb on + strand, within OH686_03710at 768.497 kb on - strand, within OH686_03710at 768.497 kb on - strand, within OH686_03710at 768.497 kb on - strand, within OH686_03710at 768.497 kb on - strand, within OH686_03710at 768.497 kb on - strand, within OH686_03710at 768.509 kb on + strand, within OH686_03710at 768.641 kb on + strand, within OH686_03710at 768.641 kb on + strand, within OH686_03710at 768.641 kb on + strand, within OH686_03710at 768.641 kb on + strand, within OH686_03710at 768.641 kb on + strand, within OH686_03710at 768.641 kb on + strand, within OH686_03710at 768.641 kb on + strand, within OH686_03710at 768.642 kb on - strand, within OH686_03710at 768.642 kb on - strand, within OH686_03710at 768.642 kb on - strand, within OH686_03710at 768.642 kb on - strand, within OH686_03710at 769.280 kb on + strand, within OH686_03710at 769.280 kb on + strand, within OH686_03710at 769.280 kb on + strand, within OH686_03710at 769.280 kb on + strand, within OH686_03710at 769.280 kb on + strand, within OH686_03710at 769.280 kb on + strand, within OH686_03710at 769.280 kb on + strand, within OH686_03710at 769.280 kb on + strand, within OH686_03710at 769.280 kb on + strand, within OH686_03710at 769.280 kb on + strand, within OH686_03710at 769.281 kb on - strand, within OH686_03710at 769.281 kb on - strand, within OH686_03710at 769.281 kb on - strand, within OH686_03710at 769.281 kb on - strand, within OH686_03710at 769.281 kb on - strand, within OH686_03710at 769.281 kb on - strand, within OH686_03710at 769.397 kb on + strand, within OH686_03710at 769.397 kb on + strand, within OH686_03710at 769.397 kb on + strand, within OH686_03710at 769.398 kb on - strand, within OH686_03710at 769.398 kb on - strand, within OH686_03710at 769.398 kb on - strand, within OH686_03710at 769.398 kb on - strand, within OH686_03710at 769.398 kb on - strand, within OH686_03710at 769.398 kb on - strand, within OH686_03710at 769.398 kb on - strand, within OH686_03710at 769.426 kb on - strand, within OH686_03710at 769.582 kb on - strandat 769.582 kb on - strandat 769.698 kb on + strandat 769.698 kb on + strandat 769.699 kb on - strandat 769.699 kb on - strandat 769.788 kb on + strandat 769.809 kb on + strandat 769.809 kb on + strandat 769.809 kb on + strandat 769.810 kb on - strandat 769.810 kb on - strandat 769.810 kb on - strandat 769.810 kb on - strandat 769.810 kb on - strandat 769.810 kb on - strandat 769.810 kb on - strandat 769.813 kb on + strandat 769.813 kb on + strandat 769.813 kb on + strandat 769.813 kb on + strandat 769.813 kb on + strandat 769.814 kb on - strandat 769.814 kb on - strandat 769.814 kb on - strandat 769.814 kb on - strandat 769.895 kb on + strandat 769.895 kb on + strandat 769.896 kb on - strandat 769.896 kb on - strandat 769.896 kb on - strandat 769.896 kb on - strandat 770.002 kb on + strandat 770.003 kb on - strandat 770.003 kb on - strandat 770.003 kb on - strandat 770.204 kb on + strand, within OH686_03715at 770.204 kb on + strand, within OH686_03715at 770.204 kb on + strand, within OH686_03715at 770.204 kb on + strand, within OH686_03715at 770.204 kb on + strand, within OH686_03715at 770.204 kb on + strand, within OH686_03715at 770.205 kb on - strand, within OH686_03715at 770.205 kb on - strand, within OH686_03715at 770.205 kb on - strand, within OH686_03715at 770.331 kb on - strand, within OH686_03715at 770.400 kb on + strandat 770.400 kb on + strandat 770.400 kb on + strandat 770.400 kb on + strandat 770.400 kb on + strandat 770.400 kb on + strandat 770.401 kb on - strandat 770.401 kb on - strandat 770.401 kb on - strandat 770.401 kb on - strandat 770.401 kb on - strandat 770.401 kb on - strandat 770.401 kb on - strandat 770.625 kb on + strand, within OH686_03720at 770.626 kb on - strand, within OH686_03720at 770.626 kb on - strand, within OH686_03720at 770.626 kb on - strand, within OH686_03720at 770.626 kb on - strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.637 kb on + strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.638 kb on - strand, within OH686_03720at 770.651 kb on - strand, within OH686_03720

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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766,892 + OH686_03705 0.50 +0.2
766,927 + OH686_03705 0.52 +0.3
767,109 + OH686_03705 0.62 -0.1
767,370 + OH686_03705 0.76 -0.9
767,370 + OH686_03705 0.76 -0.1
767,371 - OH686_03705 0.76 +0.2
767,371 - OH686_03705 0.76 -0.8
767,371 - OH686_03705 0.76 -1.3
767,371 - OH686_03705 0.76 -0.5
767,371 - OH686_03705 0.76 +0.2
767,371 - OH686_03705 0.76 -1.0
767,374 - OH686_03705 0.77 +0.7
767,374 - OH686_03705 0.77 -0.5
767,769 + -2.0
767,769 + -0.2
767,769 + -1.4
767,769 + +0.5
767,769 + -1.0
767,769 + -0.9
767,769 + -1.4
767,769 + -0.7
767,770 - +0.0
767,770 - -0.2
767,770 - -1.3
767,770 - +0.2
767,807 + -0.1
767,807 + +1.5
767,807 + +0.7
767,807 + -0.0
767,807 + -0.4
767,912 - +0.2
768,080 + OH686_03710 0.14 -1.7
768,081 - OH686_03710 0.15 +0.1
768,081 - OH686_03710 0.15 -0.1
768,081 - OH686_03710 0.15 -2.1
768,496 + OH686_03710 0.36 -1.1
768,496 + OH686_03710 0.36 -0.9
768,496 + OH686_03710 0.36 -0.8
768,496 + OH686_03710 0.36 -0.5
768,497 - OH686_03710 0.37 -0.5
768,497 - OH686_03710 0.37 -0.8
768,497 - OH686_03710 0.37 -0.1
768,497 - OH686_03710 0.37 -2.6
768,497 - OH686_03710 0.37 -1.6
768,509 + OH686_03710 0.37 -0.9
768,641 + OH686_03710 0.44 -0.7
768,641 + OH686_03710 0.44 -0.5
768,641 + OH686_03710 0.44 -0.4
768,641 + OH686_03710 0.44 -1.0
768,641 + OH686_03710 0.44 -2.0
768,641 + OH686_03710 0.44 +0.0
768,641 + OH686_03710 0.44 -0.5
768,642 - OH686_03710 0.44 -0.9
768,642 - OH686_03710 0.44 -1.4
768,642 - OH686_03710 0.44 +0.5
768,642 - OH686_03710 0.44 -1.2
769,280 + OH686_03710 0.78 -1.9
769,280 + OH686_03710 0.78 -2.2
769,280 + OH686_03710 0.78 -2.0
769,280 + OH686_03710 0.78 -2.7
769,280 + OH686_03710 0.78 -0.9
769,280 + OH686_03710 0.78 -3.4
769,280 + OH686_03710 0.78 -1.5
769,280 + OH686_03710 0.78 -0.7
769,280 + OH686_03710 0.78 -0.4
769,280 + OH686_03710 0.78 -0.8
769,281 - OH686_03710 0.78 -1.9
769,281 - OH686_03710 0.78 -1.2
769,281 - OH686_03710 0.78 -1.0
769,281 - OH686_03710 0.78 -2.1
769,281 - OH686_03710 0.78 -1.1
769,281 - OH686_03710 0.78 -0.3
769,397 + OH686_03710 0.84 -0.9
769,397 + OH686_03710 0.84 -0.2
769,397 + OH686_03710 0.84 -0.7
769,398 - OH686_03710 0.84 -1.1
769,398 - OH686_03710 0.84 -0.7
769,398 - OH686_03710 0.84 -2.4
769,398 - OH686_03710 0.84 -0.6
769,398 - OH686_03710 0.84 -0.8
769,398 - OH686_03710 0.84 -0.7
769,398 - OH686_03710 0.84 -0.3
769,426 - OH686_03710 0.86 +0.1
769,582 - -0.4
769,582 - -1.5
769,698 + -0.0
769,698 + -0.5
769,699 - -2.7
769,699 - -0.3
769,788 + +0.9
769,809 + -0.4
769,809 + +0.6
769,809 + -0.2
769,810 - +0.2
769,810 - +0.5
769,810 - -2.6
769,810 - -0.5
769,810 - -1.2
769,810 - -0.2
769,810 - +1.2
769,813 + -0.3
769,813 + +0.1
769,813 + -0.4
769,813 + -1.0
769,813 + -1.1
769,814 - -0.3
769,814 - +0.4
769,814 - -0.1
769,814 - -0.5
769,895 + +0.3
769,895 + -0.9
769,896 - +0.1
769,896 - -0.5
769,896 - +0.2
769,896 - -0.3
770,002 + -1.2
770,003 - -0.3
770,003 - +0.8
770,003 - +0.1
770,204 + OH686_03715 0.48 -0.1
770,204 + OH686_03715 0.48 -0.5
770,204 + OH686_03715 0.48 +0.3
770,204 + OH686_03715 0.48 -0.5
770,204 + OH686_03715 0.48 -0.5
770,204 + OH686_03715 0.48 -0.1
770,205 - OH686_03715 0.48 +0.2
770,205 - OH686_03715 0.48 -1.7
770,205 - OH686_03715 0.48 -0.4
770,331 - OH686_03715 0.79 -0.2
770,400 + -0.1
770,400 + +1.1
770,400 + +0.3
770,400 + -0.0
770,400 + -0.0
770,400 + +0.4
770,401 - +0.8
770,401 - +0.3
770,401 - -0.2
770,401 - +0.6
770,401 - +0.1
770,401 - +0.7
770,401 - -0.6
770,625 + OH686_03720 0.23 +0.6
770,626 - OH686_03720 0.23 -2.2
770,626 - OH686_03720 0.23 -1.0
770,626 - OH686_03720 0.23 +0.4
770,626 - OH686_03720 0.23 -0.1
770,637 + OH686_03720 0.24 -0.4
770,637 + OH686_03720 0.24 +0.6
770,637 + OH686_03720 0.24 -0.1
770,637 + OH686_03720 0.24 +0.4
770,637 + OH686_03720 0.24 -0.3
770,637 + OH686_03720 0.24 -0.2
770,637 + OH686_03720 0.24 +0.0
770,637 + OH686_03720 0.24 -0.6
770,637 + OH686_03720 0.24 +0.1
770,637 + OH686_03720 0.24 -0.4
770,637 + OH686_03720 0.24 -0.1
770,637 + OH686_03720 0.24 -0.3
770,637 + OH686_03720 0.24 -0.0
770,637 + OH686_03720 0.24 -0.7
770,637 + OH686_03720 0.24 +0.4
770,637 + OH686_03720 0.24 -0.0
770,637 + OH686_03720 0.24 +0.2
770,637 + OH686_03720 0.24 +1.8
770,637 + OH686_03720 0.24 -0.0
770,637 + OH686_03720 0.24 -0.1
770,637 + OH686_03720 0.24 -0.1
770,637 + OH686_03720 0.24 +0.4
770,637 + OH686_03720 0.24 +0.4
770,638 - OH686_03720 0.24 +0.2
770,638 - OH686_03720 0.24 -0.5
770,638 - OH686_03720 0.24 +0.4
770,638 - OH686_03720 0.24 -0.0
770,638 - OH686_03720 0.24 -0.0
770,638 - OH686_03720 0.24 -0.8
770,638 - OH686_03720 0.24 -0.2
770,638 - OH686_03720 0.24 -0.0
770,638 - OH686_03720 0.24 +0.9
770,638 - OH686_03720 0.24 -0.6
770,638 - OH686_03720 0.24 -0.4
770,638 - OH686_03720 0.24 -1.2
770,638 - OH686_03720 0.24 -0.4
770,638 - OH686_03720 0.24 +0.9
770,638 - OH686_03720 0.24 -0.5
770,638 - OH686_03720 0.24 -0.6
770,638 - OH686_03720 0.24 +0.5
770,638 - OH686_03720 0.24 -0.6
770,638 - OH686_03720 0.24 +0.1
770,638 - OH686_03720 0.24 +0.9
770,638 - OH686_03720 0.24 -0.7
770,638 - OH686_03720 0.24 -0.2
770,638 - OH686_03720 0.24 -0.5
770,638 - OH686_03720 0.24 -0.2
770,651 - OH686_03720 0.26 -0.4

Or see this region's nucleotide sequence