Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3102 and EX28DRAFT_3103 are separated by 102 nucleotides EX28DRAFT_3103 and EX28DRAFT_3104 are separated by 125 nucleotides EX28DRAFT_3104 and EX28DRAFT_3105 are separated by 81 nucleotides EX28DRAFT_3105 and EX28DRAFT_3106 are separated by 67 nucleotides
EX28DRAFT_3102: EX28DRAFT_3102 - RNA polymerase, sigma 70 subunit, RpoD, at 411,885 to 413,868
_3102
EX28DRAFT_3103: EX28DRAFT_3103 - G/U mismatch-specific uracil-DNA glycosylase (EC 3.2.2.-), at 413,971 to 414,477
_3103
EX28DRAFT_3104: EX28DRAFT_3104 - tRNA, at 414,603 to 414,678
_3104
EX28DRAFT_3105: EX28DRAFT_3105 - Ogr/Delta-like zinc finger, at 414,760 to 414,960
_3105
EX28DRAFT_3106: EX28DRAFT_3106 - Phage protein D, at 415,028 to 416,182
_3106
Position (kb) 414
415 Strain fitness (log2 ratio) -1
0
1 at 413.917 kb on + strand at 414.144 kb on - strand, within EX28DRAFT_3103 at 414.191 kb on - strand, within EX28DRAFT_3103 at 414.329 kb on - strand, within EX28DRAFT_3103 at 414.354 kb on - strand, within EX28DRAFT_3103 at 414.511 kb on - strand at 414.849 kb on + strand, within EX28DRAFT_3105 at 414.894 kb on + strand, within EX28DRAFT_3105 at 414.905 kb on - strand, within EX28DRAFT_3105 at 414.905 kb on - strand, within EX28DRAFT_3105 at 414.918 kb on + strand, within EX28DRAFT_3105 at 415.018 kb on - strand at 415.046 kb on - strand at 415.079 kb on - strand at 415.090 kb on + strand at 415.090 kb on + strand at 415.232 kb on + strand, within EX28DRAFT_3106 at 415.320 kb on - strand, within EX28DRAFT_3106 at 415.513 kb on - strand, within EX28DRAFT_3106 at 415.628 kb on - strand, within EX28DRAFT_3106 at 415.664 kb on - strand, within EX28DRAFT_3106 at 415.718 kb on - strand, within EX28DRAFT_3106 at 415.921 kb on + strand, within EX28DRAFT_3106 at 415.921 kb on + strand, within EX28DRAFT_3106
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 413,917 + -0.2 414,144 - EX28DRAFT_3103 0.34 -0.6 414,191 - EX28DRAFT_3103 0.43 +0.6 414,329 - EX28DRAFT_3103 0.71 -0.4 414,354 - EX28DRAFT_3103 0.76 +0.2 414,511 - -0.2 414,849 + EX28DRAFT_3105 0.44 -0.8 414,894 + EX28DRAFT_3105 0.67 -0.5 414,905 - EX28DRAFT_3105 0.72 +0.2 414,905 - EX28DRAFT_3105 0.72 +1.3 414,918 + EX28DRAFT_3105 0.79 -0.0 415,018 - -1.1 415,046 - +0.8 415,079 - -0.2 415,090 + +1.1 415,090 + +0.1 415,232 + EX28DRAFT_3106 0.18 -0.3 415,320 - EX28DRAFT_3106 0.25 -0.3 415,513 - EX28DRAFT_3106 0.42 -0.7 415,628 - EX28DRAFT_3106 0.52 +0.5 415,664 - EX28DRAFT_3106 0.55 +0.5 415,718 - EX28DRAFT_3106 0.60 -0.3 415,921 + EX28DRAFT_3106 0.77 -0.2 415,921 + EX28DRAFT_3106 0.77 -0.2
Or see this region's nucleotide sequence