Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2995

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2993 and EX28DRAFT_2994 are separated by 63 nucleotidesEX28DRAFT_2994 and EX28DRAFT_2995 are separated by 82 nucleotidesEX28DRAFT_2995 and EX28DRAFT_2996 are separated by 56 nucleotidesEX28DRAFT_2996 and EX28DRAFT_2997 overlap by 1 nucleotides EX28DRAFT_2993: EX28DRAFT_2993 - putative oxygen-independent coproporphyrinogen III oxidase, at 302,984 to 304,126 _2993 EX28DRAFT_2994: EX28DRAFT_2994 - Uncharacterized protein conserved in bacteria, at 304,190 to 304,528 _2994 EX28DRAFT_2995: EX28DRAFT_2995 - Protein of unknown function (DUF2884), at 304,611 to 305,327 _2995 EX28DRAFT_2996: EX28DRAFT_2996 - Uncharacterized protein conserved in bacteria, at 305,384 to 305,710 _2996 EX28DRAFT_2997: EX28DRAFT_2997 - tRNA (guanine-N(7)-)-methyltransferase, at 305,710 to 306,429 _2997 Position (kb) 304 305 306Strain fitness (log2 ratio) -2 -1 0 1at 303.667 kb on - strand, within EX28DRAFT_2993at 303.667 kb on - strand, within EX28DRAFT_2993at 303.720 kb on - strand, within EX28DRAFT_2993at 303.744 kb on - strand, within EX28DRAFT_2993at 304.053 kb on - strandat 304.086 kb on + strandat 304.237 kb on - strand, within EX28DRAFT_2994at 304.277 kb on + strand, within EX28DRAFT_2994at 304.279 kb on + strand, within EX28DRAFT_2994at 304.279 kb on + strand, within EX28DRAFT_2994at 304.279 kb on + strand, within EX28DRAFT_2994at 304.279 kb on + strand, within EX28DRAFT_2994at 304.310 kb on + strand, within EX28DRAFT_2994at 304.311 kb on - strand, within EX28DRAFT_2994at 304.311 kb on - strand, within EX28DRAFT_2994at 304.311 kb on - strand, within EX28DRAFT_2994at 304.311 kb on - strand, within EX28DRAFT_2994at 304.311 kb on - strand, within EX28DRAFT_2994at 304.311 kb on - strand, within EX28DRAFT_2994at 304.388 kb on + strand, within EX28DRAFT_2994at 304.437 kb on + strand, within EX28DRAFT_2994at 304.437 kb on + strand, within EX28DRAFT_2994at 304.450 kb on + strand, within EX28DRAFT_2994at 304.479 kb on + strand, within EX28DRAFT_2994at 304.489 kb on + strand, within EX28DRAFT_2994at 304.489 kb on + strand, within EX28DRAFT_2994at 304.526 kb on + strandat 304.556 kb on + strandat 304.556 kb on + strandat 304.613 kb on - strandat 304.617 kb on - strandat 304.617 kb on - strandat 304.894 kb on + strand, within EX28DRAFT_2995at 304.895 kb on - strand, within EX28DRAFT_2995at 305.229 kb on + strand, within EX28DRAFT_2995at 305.331 kb on - strandat 305.331 kb on - strandat 305.360 kb on + strandat 305.360 kb on + strandat 305.383 kb on - strandat 305.383 kb on - strandat 305.385 kb on + strandat 305.386 kb on - strandat 305.386 kb on - strandat 305.452 kb on + strand, within EX28DRAFT_2996at 305.452 kb on + strand, within EX28DRAFT_2996at 305.606 kb on + strand, within EX28DRAFT_2996at 305.606 kb on + strand, within EX28DRAFT_2996at 305.607 kb on - strand, within EX28DRAFT_2996at 305.712 kb on - strandat 305.731 kb on + strandat 305.731 kb on + strandat 305.810 kb on + strand, within EX28DRAFT_2997at 305.811 kb on - strand, within EX28DRAFT_2997at 305.811 kb on - strand, within EX28DRAFT_2997at 305.811 kb on - strand, within EX28DRAFT_2997at 305.868 kb on + strand, within EX28DRAFT_2997at 305.868 kb on + strand, within EX28DRAFT_2997at 305.868 kb on + strand, within EX28DRAFT_2997at 305.868 kb on + strand, within EX28DRAFT_2997at 305.869 kb on - strand, within EX28DRAFT_2997at 305.869 kb on - strand, within EX28DRAFT_2997at 305.879 kb on + strand, within EX28DRAFT_2997at 305.902 kb on - strand, within EX28DRAFT_2997at 305.929 kb on - strand, within EX28DRAFT_2997at 305.973 kb on + strand, within EX28DRAFT_2997at 305.977 kb on - strand, within EX28DRAFT_2997at 305.977 kb on - strand, within EX28DRAFT_2997at 306.048 kb on + strand, within EX28DRAFT_2997

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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303,667 - EX28DRAFT_2993 0.60 -0.2
303,667 - EX28DRAFT_2993 0.60 +0.1
303,720 - EX28DRAFT_2993 0.64 +0.1
303,744 - EX28DRAFT_2993 0.66 +0.7
304,053 - +0.2
304,086 + +0.4
304,237 - EX28DRAFT_2994 0.14 +0.6
304,277 + EX28DRAFT_2994 0.26 +0.2
304,279 + EX28DRAFT_2994 0.26 +0.1
304,279 + EX28DRAFT_2994 0.26 +0.3
304,279 + EX28DRAFT_2994 0.26 +0.9
304,279 + EX28DRAFT_2994 0.26 +0.1
304,310 + EX28DRAFT_2994 0.35 -2.2
304,311 - EX28DRAFT_2994 0.36 -0.1
304,311 - EX28DRAFT_2994 0.36 -1.1
304,311 - EX28DRAFT_2994 0.36 +0.5
304,311 - EX28DRAFT_2994 0.36 -0.6
304,311 - EX28DRAFT_2994 0.36 +0.6
304,311 - EX28DRAFT_2994 0.36 +0.2
304,388 + EX28DRAFT_2994 0.58 -0.4
304,437 + EX28DRAFT_2994 0.73 +0.7
304,437 + EX28DRAFT_2994 0.73 +1.2
304,450 + EX28DRAFT_2994 0.77 -1.8
304,479 + EX28DRAFT_2994 0.85 -0.5
304,489 + EX28DRAFT_2994 0.88 +0.4
304,489 + EX28DRAFT_2994 0.88 -1.1
304,526 + -0.2
304,556 + -1.4
304,556 + +0.2
304,613 - -0.5
304,617 - +0.3
304,617 - -0.7
304,894 + EX28DRAFT_2995 0.39 +0.7
304,895 - EX28DRAFT_2995 0.40 +0.4
305,229 + EX28DRAFT_2995 0.86 +0.9
305,331 - -0.9
305,331 - +0.5
305,360 + +0.3
305,360 + -0.6
305,383 - -0.2
305,383 - -0.3
305,385 + -0.5
305,386 - -0.7
305,386 - +0.1
305,452 + EX28DRAFT_2996 0.21 -0.3
305,452 + EX28DRAFT_2996 0.21 -1.5
305,606 + EX28DRAFT_2996 0.68 -0.1
305,606 + EX28DRAFT_2996 0.68 -0.7
305,607 - EX28DRAFT_2996 0.68 -1.9
305,712 - +0.3
305,731 + -0.4
305,731 + -0.4
305,810 + EX28DRAFT_2997 0.14 -0.7
305,811 - EX28DRAFT_2997 0.14 -0.4
305,811 - EX28DRAFT_2997 0.14 +0.1
305,811 - EX28DRAFT_2997 0.14 +0.1
305,868 + EX28DRAFT_2997 0.22 -0.2
305,868 + EX28DRAFT_2997 0.22 +0.2
305,868 + EX28DRAFT_2997 0.22 -0.9
305,868 + EX28DRAFT_2997 0.22 -0.9
305,869 - EX28DRAFT_2997 0.22 -0.9
305,869 - EX28DRAFT_2997 0.22 +0.0
305,879 + EX28DRAFT_2997 0.23 +0.2
305,902 - EX28DRAFT_2997 0.27 -0.9
305,929 - EX28DRAFT_2997 0.30 -0.4
305,973 + EX28DRAFT_2997 0.37 -0.1
305,977 - EX28DRAFT_2997 0.37 -0.6
305,977 - EX28DRAFT_2997 0.37 +0.0
306,048 + EX28DRAFT_2997 0.47 -0.4

Or see this region's nucleotide sequence