Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20830

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20825 and AO356_20830 are separated by 452 nucleotidesAO356_20830 and AO356_20835 are separated by 174 nucleotidesAO356_20835 and AO356_20840 are separated by 147 nucleotides AO356_20825: AO356_20825 - nitrate reductase, at 4,638,698 to 4,640,227 _20825 AO356_20830: AO356_20830 - phosphoadenosine phosphosulfate reductase, at 4,640,680 to 4,641,423 _20830 AO356_20835: AO356_20835 - phosphoserine phosphatase, at 4,641,598 to 4,642,215 _20835 AO356_20840: AO356_20840 - aminodeoxychorismate synthase component I, at 4,642,363 to 4,643,706 _20840 Position (kb) 4640 4641 4642Strain fitness (log2 ratio) -2 -1 0 1 2at 4639.732 kb on - strand, within AO356_20825at 4639.791 kb on + strand, within AO356_20825at 4639.792 kb on - strand, within AO356_20825at 4639.792 kb on - strand, within AO356_20825at 4639.792 kb on - strand, within AO356_20825at 4639.792 kb on - strand, within AO356_20825at 4639.917 kb on + strand, within AO356_20825at 4639.941 kb on + strand, within AO356_20825at 4639.941 kb on + strand, within AO356_20825at 4639.941 kb on + strand, within AO356_20825at 4639.941 kb on + strand, within AO356_20825at 4639.942 kb on - strand, within AO356_20825at 4639.942 kb on - strand, within AO356_20825at 4639.942 kb on - strand, within AO356_20825at 4640.004 kb on + strand, within AO356_20825at 4640.004 kb on + strand, within AO356_20825at 4640.004 kb on + strand, within AO356_20825at 4640.004 kb on + strand, within AO356_20825at 4640.004 kb on + strand, within AO356_20825at 4640.005 kb on - strand, within AO356_20825at 4640.005 kb on - strand, within AO356_20825at 4640.005 kb on - strand, within AO356_20825at 4640.025 kb on + strand, within AO356_20825at 4640.025 kb on + strand, within AO356_20825at 4640.026 kb on - strand, within AO356_20825at 4640.206 kb on + strandat 4640.221 kb on + strandat 4640.221 kb on + strandat 4640.221 kb on + strandat 4640.536 kb on - strandat 4640.536 kb on - strandat 4640.849 kb on + strand, within AO356_20830at 4640.850 kb on - strand, within AO356_20830at 4640.873 kb on + strand, within AO356_20830at 4640.874 kb on - strand, within AO356_20830at 4641.098 kb on + strand, within AO356_20830at 4641.146 kb on + strand, within AO356_20830at 4641.179 kb on + strand, within AO356_20830at 4641.209 kb on + strand, within AO356_20830at 4641.210 kb on - strand, within AO356_20830at 4641.383 kb on + strandat 4641.383 kb on + strandat 4641.462 kb on + strandat 4641.462 kb on + strandat 4641.462 kb on + strandat 4641.462 kb on + strandat 4641.462 kb on + strandat 4641.462 kb on + strandat 4641.462 kb on + strandat 4641.462 kb on + strandat 4641.463 kb on - strandat 4641.463 kb on - strandat 4641.463 kb on - strandat 4641.463 kb on - strandat 4641.878 kb on - strand, within AO356_20835at 4642.027 kb on + strand, within AO356_20835at 4642.027 kb on + strand, within AO356_20835at 4642.028 kb on - strand, within AO356_20835at 4642.028 kb on - strand, within AO356_20835at 4642.028 kb on - strand, within AO356_20835at 4642.031 kb on - strand, within AO356_20835at 4642.057 kb on + strand, within AO356_20835at 4642.057 kb on + strand, within AO356_20835at 4642.057 kb on + strand, within AO356_20835at 4642.058 kb on - strand, within AO356_20835at 4642.213 kb on + strandat 4642.214 kb on - strandat 4642.214 kb on - strandat 4642.214 kb on - strandat 4642.214 kb on - strandat 4642.214 kb on - strandat 4642.321 kb on + strandat 4642.321 kb on + strandat 4642.322 kb on - strandat 4642.324 kb on - strandat 4642.364 kb on + strandat 4642.364 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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4,639,732 - AO356_20825 0.68 -0.7
4,639,791 + AO356_20825 0.71 +0.3
4,639,792 - AO356_20825 0.72 -0.5
4,639,792 - AO356_20825 0.72 +0.2
4,639,792 - AO356_20825 0.72 -0.2
4,639,792 - AO356_20825 0.72 +0.5
4,639,917 + AO356_20825 0.80 +1.4
4,639,941 + AO356_20825 0.81 +0.9
4,639,941 + AO356_20825 0.81 +0.4
4,639,941 + AO356_20825 0.81 -0.7
4,639,941 + AO356_20825 0.81 +1.1
4,639,942 - AO356_20825 0.81 +0.9
4,639,942 - AO356_20825 0.81 +0.7
4,639,942 - AO356_20825 0.81 +0.5
4,640,004 + AO356_20825 0.85 +0.9
4,640,004 + AO356_20825 0.85 -0.2
4,640,004 + AO356_20825 0.85 +0.2
4,640,004 + AO356_20825 0.85 -0.5
4,640,004 + AO356_20825 0.85 -0.0
4,640,005 - AO356_20825 0.85 +0.7
4,640,005 - AO356_20825 0.85 +0.6
4,640,005 - AO356_20825 0.85 +0.4
4,640,025 + AO356_20825 0.87 -0.5
4,640,025 + AO356_20825 0.87 -0.9
4,640,026 - AO356_20825 0.87 -0.6
4,640,206 + -0.8
4,640,221 + -0.2
4,640,221 + +0.7
4,640,221 + -0.5
4,640,536 - -0.1
4,640,536 - -0.8
4,640,849 + AO356_20830 0.23 +2.3
4,640,850 - AO356_20830 0.23 +0.3
4,640,873 + AO356_20830 0.26 -0.4
4,640,874 - AO356_20830 0.26 +0.7
4,641,098 + AO356_20830 0.56 +0.3
4,641,146 + AO356_20830 0.63 +0.8
4,641,179 + AO356_20830 0.67 -0.5
4,641,209 + AO356_20830 0.71 +1.3
4,641,210 - AO356_20830 0.71 +0.9
4,641,383 + +0.3
4,641,383 + -0.3
4,641,462 + +0.5
4,641,462 + -2.5
4,641,462 + +0.8
4,641,462 + -0.4
4,641,462 + +0.1
4,641,462 + -1.3
4,641,462 + +0.9
4,641,462 + -0.0
4,641,463 - +0.5
4,641,463 - -0.2
4,641,463 - +0.3
4,641,463 - -0.4
4,641,878 - AO356_20835 0.45 +0.4
4,642,027 + AO356_20835 0.69 +0.6
4,642,027 + AO356_20835 0.69 -1.0
4,642,028 - AO356_20835 0.70 +1.2
4,642,028 - AO356_20835 0.70 +1.3
4,642,028 - AO356_20835 0.70 +0.4
4,642,031 - AO356_20835 0.70 +0.7
4,642,057 + AO356_20835 0.74 -0.3
4,642,057 + AO356_20835 0.74 +2.3
4,642,057 + AO356_20835 0.74 +0.5
4,642,058 - AO356_20835 0.74 -1.7
4,642,213 + -0.6
4,642,214 - +0.2
4,642,214 - -0.2
4,642,214 - +0.5
4,642,214 - -0.1
4,642,214 - -1.3
4,642,321 + +0.1
4,642,321 + +0.9
4,642,322 - -0.5
4,642,324 - +0.4
4,642,364 + -0.9
4,642,364 + +1.0

Or see this region's nucleotide sequence