Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09040

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09035 and AO356_09040 are separated by 213 nucleotidesAO356_09040 and AO356_09045 are separated by 34 nucleotides AO356_09035: AO356_09035 - chemotaxis protein, at 2,045,828 to 2,047,453 _09035 AO356_09040: AO356_09040 - potassium:proton antiporter, at 2,047,667 to 2,049,409 _09040 AO356_09045: AO356_09045 - potassium transporter KefA, at 2,049,444 to 2,052,806 _09045 Position (kb) 2047 2048 2049 2050Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2046.667 kb on + strand, within AO356_09035at 2046.762 kb on + strand, within AO356_09035at 2046.762 kb on + strand, within AO356_09035at 2046.763 kb on - strand, within AO356_09035at 2046.763 kb on - strand, within AO356_09035at 2046.888 kb on + strand, within AO356_09035at 2046.888 kb on + strand, within AO356_09035at 2046.888 kb on + strand, within AO356_09035at 2046.889 kb on - strand, within AO356_09035at 2046.889 kb on - strand, within AO356_09035at 2046.889 kb on - strand, within AO356_09035at 2047.084 kb on + strand, within AO356_09035at 2047.451 kb on + strandat 2047.552 kb on - strandat 2047.598 kb on + strandat 2047.598 kb on + strandat 2047.599 kb on - strandat 2047.599 kb on - strandat 2047.599 kb on - strandat 2047.716 kb on + strandat 2047.717 kb on - strandat 2047.717 kb on - strandat 2047.835 kb on + strandat 2047.835 kb on + strandat 2047.835 kb on + strandat 2047.835 kb on + strandat 2047.835 kb on + strandat 2047.836 kb on - strandat 2047.847 kb on + strand, within AO356_09040at 2047.848 kb on - strand, within AO356_09040at 2047.848 kb on - strand, within AO356_09040at 2048.411 kb on + strand, within AO356_09040at 2048.412 kb on - strand, within AO356_09040at 2048.412 kb on - strand, within AO356_09040at 2048.412 kb on - strand, within AO356_09040at 2048.412 kb on - strand, within AO356_09040at 2048.412 kb on - strand, within AO356_09040at 2048.412 kb on - strand, within AO356_09040at 2048.412 kb on - strand, within AO356_09040at 2048.619 kb on + strand, within AO356_09040at 2048.619 kb on + strand, within AO356_09040at 2048.619 kb on + strand, within AO356_09040at 2048.619 kb on + strand, within AO356_09040at 2048.620 kb on - strand, within AO356_09040at 2048.620 kb on - strand, within AO356_09040at 2048.753 kb on + strand, within AO356_09040at 2048.773 kb on + strand, within AO356_09040at 2048.919 kb on - strand, within AO356_09040at 2049.037 kb on + strand, within AO356_09040at 2049.037 kb on + strand, within AO356_09040at 2049.037 kb on + strand, within AO356_09040at 2049.037 kb on + strand, within AO356_09040at 2049.037 kb on + strand, within AO356_09040at 2049.037 kb on + strand, within AO356_09040at 2049.038 kb on - strand, within AO356_09040at 2049.038 kb on - strand, within AO356_09040at 2049.038 kb on - strand, within AO356_09040at 2049.162 kb on + strand, within AO356_09040at 2049.163 kb on - strand, within AO356_09040at 2049.203 kb on + strand, within AO356_09040at 2049.407 kb on + strandat 2049.443 kb on + strandat 2049.443 kb on + strandat 2049.443 kb on + strandat 2049.444 kb on - strandat 2049.444 kb on - strandat 2049.444 kb on - strandat 2049.444 kb on - strandat 2049.444 kb on - strandat 2049.651 kb on + strandat 2049.651 kb on + strandat 2049.652 kb on - strandat 2049.947 kb on + strand, within AO356_09045at 2049.947 kb on + strand, within AO356_09045at 2050.290 kb on + strand, within AO356_09045

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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2,046,667 + AO356_09035 0.52 +0.3
2,046,762 + AO356_09035 0.57 -0.8
2,046,762 + AO356_09035 0.57 -0.3
2,046,763 - AO356_09035 0.58 +0.9
2,046,763 - AO356_09035 0.58 -0.7
2,046,888 + AO356_09035 0.65 +0.4
2,046,888 + AO356_09035 0.65 -0.3
2,046,888 + AO356_09035 0.65 -1.0
2,046,889 - AO356_09035 0.65 -0.1
2,046,889 - AO356_09035 0.65 -0.1
2,046,889 - AO356_09035 0.65 +0.2
2,047,084 + AO356_09035 0.77 +0.6
2,047,451 + -0.6
2,047,552 - +0.2
2,047,598 + +1.7
2,047,598 + +0.3
2,047,599 - +0.9
2,047,599 - -1.3
2,047,599 - -0.3
2,047,716 + -0.5
2,047,717 - -1.2
2,047,717 - +0.6
2,047,835 + +1.0
2,047,835 + -1.2
2,047,835 + -2.1
2,047,835 + -0.5
2,047,835 + -2.5
2,047,836 - -0.9
2,047,847 + AO356_09040 0.10 -1.2
2,047,848 - AO356_09040 0.10 -1.5
2,047,848 - AO356_09040 0.10 -0.6
2,048,411 + AO356_09040 0.43 -1.7
2,048,412 - AO356_09040 0.43 +0.1
2,048,412 - AO356_09040 0.43 -1.2
2,048,412 - AO356_09040 0.43 -1.4
2,048,412 - AO356_09040 0.43 -2.2
2,048,412 - AO356_09040 0.43 -1.3
2,048,412 - AO356_09040 0.43 -0.9
2,048,412 - AO356_09040 0.43 +1.1
2,048,619 + AO356_09040 0.55 +0.8
2,048,619 + AO356_09040 0.55 -1.2
2,048,619 + AO356_09040 0.55 -0.8
2,048,619 + AO356_09040 0.55 -2.2
2,048,620 - AO356_09040 0.55 -1.1
2,048,620 - AO356_09040 0.55 +0.6
2,048,753 + AO356_09040 0.62 -2.6
2,048,773 + AO356_09040 0.63 -0.7
2,048,919 - AO356_09040 0.72 -1.0
2,049,037 + AO356_09040 0.79 -0.2
2,049,037 + AO356_09040 0.79 -0.6
2,049,037 + AO356_09040 0.79 +0.3
2,049,037 + AO356_09040 0.79 -0.7
2,049,037 + AO356_09040 0.79 -0.1
2,049,037 + AO356_09040 0.79 -3.2
2,049,038 - AO356_09040 0.79 +0.5
2,049,038 - AO356_09040 0.79 -0.3
2,049,038 - AO356_09040 0.79 -0.8
2,049,162 + AO356_09040 0.86 -3.5
2,049,163 - AO356_09040 0.86 -1.1
2,049,203 + AO356_09040 0.88 +0.0
2,049,407 + -0.4
2,049,443 + -0.1
2,049,443 + -1.7
2,049,443 + +0.7
2,049,444 - -0.4
2,049,444 - +0.4
2,049,444 - +3.2
2,049,444 - -0.3
2,049,444 - +1.4
2,049,651 + -0.7
2,049,651 + +1.1
2,049,652 - +0.3
2,049,947 + AO356_09045 0.15 -0.8
2,049,947 + AO356_09045 0.15 -0.7
2,050,290 + AO356_09045 0.25 +1.7

Or see this region's nucleotide sequence