Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07795

Experiment: Cobalt chloride 0.08 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_07790 and AO356_07795 are separated by 309 nucleotidesAO356_07795 and AO356_07800 are separated by 144 nucleotides AO356_07790: AO356_07790 - permease DsdX, at 1,740,880 to 1,742,229 _07790 AO356_07795: AO356_07795 - sulfate transporter, at 1,742,539 to 1,743,984 _07795 AO356_07800: AO356_07800 - epimerase, at 1,744,129 to 1,745,022 _07800 Position (kb) 1742 1743 1744Strain fitness (log2 ratio) -2 -1 0 1at 1741.631 kb on + strand, within AO356_07790at 1741.631 kb on + strand, within AO356_07790at 1741.632 kb on - strand, within AO356_07790at 1741.632 kb on - strand, within AO356_07790at 1741.632 kb on - strand, within AO356_07790at 1741.679 kb on + strand, within AO356_07790at 1741.679 kb on + strand, within AO356_07790at 1741.680 kb on - strand, within AO356_07790at 1742.061 kb on - strand, within AO356_07790at 1742.196 kb on - strandat 1742.275 kb on + strandat 1742.368 kb on + strandat 1742.394 kb on + strandat 1742.395 kb on - strandat 1742.395 kb on - strandat 1742.395 kb on - strandat 1742.425 kb on + strandat 1742.426 kb on - strandat 1742.534 kb on - strandat 1742.534 kb on - strandat 1742.656 kb on + strandat 1742.656 kb on + strandat 1742.656 kb on + strandat 1742.656 kb on + strandat 1742.656 kb on + strandat 1742.657 kb on - strandat 1742.657 kb on - strandat 1742.657 kb on - strandat 1742.657 kb on - strandat 1742.657 kb on - strandat 1742.657 kb on - strandat 1742.779 kb on + strand, within AO356_07795at 1742.779 kb on + strand, within AO356_07795at 1742.780 kb on - strand, within AO356_07795at 1742.780 kb on - strand, within AO356_07795at 1742.780 kb on - strand, within AO356_07795at 1742.780 kb on - strand, within AO356_07795at 1742.971 kb on + strand, within AO356_07795at 1742.972 kb on - strand, within AO356_07795at 1743.013 kb on + strand, within AO356_07795at 1743.014 kb on - strand, within AO356_07795at 1743.014 kb on - strand, within AO356_07795at 1743.206 kb on - strand, within AO356_07795at 1743.654 kb on + strand, within AO356_07795at 1743.654 kb on + strand, within AO356_07795at 1743.700 kb on + strand, within AO356_07795at 1743.700 kb on + strand, within AO356_07795at 1743.739 kb on + strand, within AO356_07795at 1743.895 kb on + strandat 1744.052 kb on + strandat 1744.103 kb on + strandat 1744.104 kb on - strandat 1744.104 kb on - strandat 1744.104 kb on - strandat 1744.238 kb on + strand, within AO356_07800at 1744.238 kb on + strand, within AO356_07800at 1744.238 kb on + strand, within AO356_07800at 1744.238 kb on + strand, within AO356_07800at 1744.239 kb on - strand, within AO356_07800at 1744.239 kb on - strand, within AO356_07800at 1744.239 kb on - strand, within AO356_07800at 1744.239 kb on - strand, within AO356_07800at 1744.370 kb on + strand, within AO356_07800at 1744.370 kb on + strand, within AO356_07800at 1744.370 kb on + strand, within AO356_07800at 1744.384 kb on + strand, within AO356_07800at 1744.384 kb on + strand, within AO356_07800at 1744.384 kb on + strand, within AO356_07800at 1744.677 kb on - strand, within AO356_07800at 1744.677 kb on - strand, within AO356_07800at 1744.960 kb on + strandat 1744.961 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
remove
1,741,631 + AO356_07790 0.56 +1.1
1,741,631 + AO356_07790 0.56 -0.8
1,741,632 - AO356_07790 0.56 -0.9
1,741,632 - AO356_07790 0.56 -0.2
1,741,632 - AO356_07790 0.56 +0.2
1,741,679 + AO356_07790 0.59 +0.8
1,741,679 + AO356_07790 0.59 -1.5
1,741,680 - AO356_07790 0.59 -0.8
1,742,061 - AO356_07790 0.87 -0.2
1,742,196 - -0.5
1,742,275 + +0.8
1,742,368 + +0.5
1,742,394 + -0.2
1,742,395 - -0.7
1,742,395 - +1.5
1,742,395 - -1.6
1,742,425 + -0.7
1,742,426 - +1.2
1,742,534 - +1.2
1,742,534 - +0.4
1,742,656 + +0.2
1,742,656 + +1.1
1,742,656 + -1.0
1,742,656 + -0.8
1,742,656 + -0.8
1,742,657 - -0.7
1,742,657 - -0.6
1,742,657 - +0.5
1,742,657 - -0.2
1,742,657 - +1.3
1,742,657 - -0.5
1,742,779 + AO356_07795 0.17 +0.1
1,742,779 + AO356_07795 0.17 -0.9
1,742,780 - AO356_07795 0.17 +0.9
1,742,780 - AO356_07795 0.17 +1.0
1,742,780 - AO356_07795 0.17 +0.7
1,742,780 - AO356_07795 0.17 -1.0
1,742,971 + AO356_07795 0.30 +0.8
1,742,972 - AO356_07795 0.30 -0.3
1,743,013 + AO356_07795 0.33 +0.3
1,743,014 - AO356_07795 0.33 +0.3
1,743,014 - AO356_07795 0.33 +0.1
1,743,206 - AO356_07795 0.46 +0.6
1,743,654 + AO356_07795 0.77 +0.1
1,743,654 + AO356_07795 0.77 +1.1
1,743,700 + AO356_07795 0.80 -0.1
1,743,700 + AO356_07795 0.80 +0.4
1,743,739 + AO356_07795 0.83 +0.2
1,743,895 + +0.6
1,744,052 + -0.7
1,744,103 + +0.5
1,744,104 - -1.5
1,744,104 - -0.1
1,744,104 - -0.0
1,744,238 + AO356_07800 0.12 +0.0
1,744,238 + AO356_07800 0.12 -0.5
1,744,238 + AO356_07800 0.12 +0.4
1,744,238 + AO356_07800 0.12 +0.5
1,744,239 - AO356_07800 0.12 +0.1
1,744,239 - AO356_07800 0.12 +0.6
1,744,239 - AO356_07800 0.12 -1.1
1,744,239 - AO356_07800 0.12 +0.1
1,744,370 + AO356_07800 0.27 +1.3
1,744,370 + AO356_07800 0.27 +0.4
1,744,370 + AO356_07800 0.27 +0.7
1,744,384 + AO356_07800 0.29 -2.2
1,744,384 + AO356_07800 0.29 +0.9
1,744,384 + AO356_07800 0.29 +0.1
1,744,677 - AO356_07800 0.61 -0.2
1,744,677 - AO356_07800 0.61 -0.0
1,744,960 + +0.1
1,744,961 - +0.2

Or see this region's nucleotide sequence