Strain Fitness in Sinorhizobium meliloti 1021 around SMc00771

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00770 and SMc00771 are separated by 117 nucleotidesSMc00771 and SMc00772 are separated by 4 nucleotidesSMc00772 and SMc00773 are separated by 3 nucleotides SMc00770: SMc00770 - putrescine-binding periplasmic protein, at 783,254 to 784,348 SMc00770 SMc00771: SMc00771 - putrescine ABC transporter ATP-binding protein, at 784,466 to 785,611 SMc00771 SMc00772: SMc00772 - putrescine ABC transporter permease, at 785,616 to 786,527 SMc00772 SMc00773: SMc00773 - putrescine ABC transporter permease, at 786,531 to 787,352 SMc00773 Position (kb) 784 785 786Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 783.627 kb on - strand, within SMc00770at 783.638 kb on + strand, within SMc00770at 783.639 kb on - strand, within SMc00770at 783.896 kb on - strand, within SMc00770at 783.921 kb on - strand, within SMc00770at 783.921 kb on - strand, within SMc00770at 783.922 kb on + strand, within SMc00770at 783.922 kb on + strand, within SMc00770at 783.922 kb on + strand, within SMc00770at 783.923 kb on - strand, within SMc00770at 783.923 kb on - strand, within SMc00770at 783.923 kb on - strandat 784.127 kb on + strand, within SMc00770at 784.167 kb on - strand, within SMc00770at 784.167 kb on - strand, within SMc00770at 784.176 kb on - strand, within SMc00770at 784.241 kb on + strandat 784.241 kb on + strandat 784.241 kb on + strandat 784.308 kb on + strandat 784.346 kb on + strandat 784.346 kb on + strandat 784.346 kb on + strandat 784.396 kb on - strandat 784.442 kb on - strandat 784.463 kb on + strandat 784.463 kb on + strandat 784.604 kb on + strand, within SMc00771at 784.604 kb on + strand, within SMc00771at 784.604 kb on + strand, within SMc00771at 784.605 kb on - strand, within SMc00771at 784.605 kb on - strand, within SMc00771at 784.605 kb on - strand, within SMc00771at 784.605 kb on - strand, within SMc00771at 784.605 kb on - strand, within SMc00771at 784.605 kb on - strand, within SMc00771at 784.759 kb on + strand, within SMc00771at 784.759 kb on + strand, within SMc00771at 784.760 kb on - strand, within SMc00771at 784.760 kb on - strand, within SMc00771at 784.775 kb on + strand, within SMc00771at 784.775 kb on + strand, within SMc00771at 785.189 kb on + strand, within SMc00771at 785.189 kb on + strand, within SMc00771at 785.241 kb on + strand, within SMc00771at 785.242 kb on - strand, within SMc00771at 785.276 kb on + strand, within SMc00771at 785.276 kb on + strand, within SMc00771at 785.277 kb on - strand, within SMc00771at 785.277 kb on - strand, within SMc00771at 785.277 kb on - strand, within SMc00771at 785.277 kb on - strand, within SMc00771at 785.280 kb on + strand, within SMc00771at 785.437 kb on - strand, within SMc00771at 785.437 kb on - strand, within SMc00771at 785.437 kb on - strand, within SMc00771at 785.598 kb on + strandat 785.598 kb on + strandat 785.656 kb on + strandat 785.656 kb on + strandat 785.656 kb on + strandat 785.657 kb on - strandat 785.668 kb on - strandat 785.668 kb on - strandat 785.668 kb on - strandat 785.754 kb on + strand, within SMc00772at 785.754 kb on + strand, within SMc00772at 785.754 kb on + strand, within SMc00772at 785.754 kb on + strand, within SMc00772at 785.754 kb on + strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.756 kb on + strand, within SMc00772at 785.756 kb on + strand, within SMc00772at 785.756 kb on + strand, within SMc00772at 785.756 kb on + strand, within SMc00772at 785.756 kb on + strand, within SMc00772at 785.756 kb on + strand, within SMc00772at 785.756 kb on + strand, within SMc00772at 785.757 kb on - strand, within SMc00772at 785.757 kb on - strand, within SMc00772at 785.757 kb on - strand, within SMc00772at 785.757 kb on - strand, within SMc00772at 785.757 kb on - strand, within SMc00772at 785.829 kb on + strand, within SMc00772at 785.829 kb on + strand, within SMc00772at 785.829 kb on + strand, within SMc00772at 785.829 kb on + strand, within SMc00772at 785.829 kb on + strand, within SMc00772at 785.830 kb on - strand, within SMc00772at 785.857 kb on - strand, within SMc00772at 785.857 kb on - strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.869 kb on - strand, within SMc00772at 785.869 kb on - strand, within SMc00772at 785.938 kb on - strand, within SMc00772at 786.027 kb on + strand, within SMc00772at 786.028 kb on - strand, within SMc00772at 786.135 kb on + strand, within SMc00772at 786.135 kb on + strand, within SMc00772at 786.135 kb on + strand, within SMc00772at 786.135 kb on + strand, within SMc00772at 786.135 kb on + strand, within SMc00772at 786.135 kb on + strand, within SMc00772at 786.136 kb on - strand, within SMc00772at 786.156 kb on + strand, within SMc00772at 786.157 kb on - strand, within SMc00772at 786.157 kb on - strand, within SMc00772at 786.157 kb on - strand, within SMc00772at 786.157 kb on - strand, within SMc00772at 786.473 kb on - strandat 786.483 kb on + strandat 786.530 kb on + strandat 786.530 kb on + strandat 786.530 kb on + strandat 786.530 kb on + strandat 786.531 kb on - strandat 786.588 kb on + strandat 786.588 kb on + strandat 786.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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783,627 - SMc00770 0.34 +0.3
783,638 + SMc00770 0.35 +2.9
783,639 - SMc00770 0.35 -1.1
783,896 - SMc00770 0.59 +1.8
783,921 - SMc00770 0.61 +1.1
783,921 - SMc00770 0.61 +1.4
783,922 + SMc00770 0.61 +0.5
783,922 + SMc00770 0.61 +0.8
783,922 + SMc00770 0.61 +0.9
783,923 - SMc00770 0.61 +1.7
783,923 - SMc00770 0.61 -1.0
783,923 - +4.7
784,127 + SMc00770 0.80 +1.2
784,167 - SMc00770 0.83 +1.0
784,167 - SMc00770 0.83 +1.0
784,176 - SMc00770 0.84 +3.1
784,241 + +1.1
784,241 + +2.1
784,241 + -0.9
784,308 + +0.1
784,346 + -2.8
784,346 + -0.2
784,346 + +0.6
784,396 - +0.2
784,442 - +1.1
784,463 + +0.8
784,463 + -0.1
784,604 + SMc00771 0.12 +1.7
784,604 + SMc00771 0.12 +2.8
784,604 + SMc00771 0.12 +1.0
784,605 - SMc00771 0.12 +2.1
784,605 - SMc00771 0.12 +0.8
784,605 - SMc00771 0.12 +1.4
784,605 - SMc00771 0.12 +2.8
784,605 - SMc00771 0.12 -1.2
784,605 - SMc00771 0.12 +1.3
784,759 + SMc00771 0.26 +0.7
784,759 + SMc00771 0.26 -0.0
784,760 - SMc00771 0.26 -0.2
784,760 - SMc00771 0.26 +1.6
784,775 + SMc00771 0.27 -1.2
784,775 + SMc00771 0.27 +1.0
785,189 + SMc00771 0.63 +1.0
785,189 + SMc00771 0.63 +1.5
785,241 + SMc00771 0.68 +4.1
785,242 - SMc00771 0.68 -0.4
785,276 + SMc00771 0.71 +2.4
785,276 + SMc00771 0.71 -0.1
785,277 - SMc00771 0.71 +1.1
785,277 - SMc00771 0.71 +1.1
785,277 - SMc00771 0.71 +1.2
785,277 - SMc00771 0.71 +0.9
785,280 + SMc00771 0.71 +0.9
785,437 - SMc00771 0.85 +0.7
785,437 - SMc00771 0.85 -1.3
785,437 - SMc00771 0.85 +0.3
785,598 + +1.3
785,598 + +1.0
785,656 + +1.2
785,656 + +0.8
785,656 + +0.6
785,657 - -0.5
785,668 - +2.4
785,668 - +1.4
785,668 - +1.2
785,754 + SMc00772 0.15 +2.2
785,754 + SMc00772 0.15 +1.0
785,754 + SMc00772 0.15 +0.4
785,754 + SMc00772 0.15 -1.3
785,754 + SMc00772 0.15 +0.3
785,755 - SMc00772 0.15 +1.2
785,755 - SMc00772 0.15 +0.4
785,755 - SMc00772 0.15 +1.4
785,755 - SMc00772 0.15 +1.4
785,755 - SMc00772 0.15 +3.1
785,755 - SMc00772 0.15 +0.2
785,755 - SMc00772 0.15 +0.3
785,755 - SMc00772 0.15 +0.9
785,755 - SMc00772 0.15 +0.0
785,755 - SMc00772 0.15 +1.2
785,756 + SMc00772 0.15 -0.4
785,756 + SMc00772 0.15 -0.1
785,756 + SMc00772 0.15 +0.6
785,756 + SMc00772 0.15 +0.9
785,756 + SMc00772 0.15 +1.4
785,756 + SMc00772 0.15 +1.4
785,756 + SMc00772 0.15 +0.9
785,757 - SMc00772 0.15 -1.2
785,757 - SMc00772 0.15 +2.4
785,757 - SMc00772 0.15 +1.2
785,757 - SMc00772 0.15 +1.0
785,757 - SMc00772 0.15 +1.3
785,829 + SMc00772 0.23 +0.6
785,829 + SMc00772 0.23 -0.2
785,829 + SMc00772 0.23 +1.3
785,829 + SMc00772 0.23 +0.8
785,829 + SMc00772 0.23 +0.4
785,830 - SMc00772 0.23 -1.6
785,857 - SMc00772 0.26 +0.7
785,857 - SMc00772 0.26 +0.4
785,868 + SMc00772 0.28 +1.1
785,868 + SMc00772 0.28 -0.4
785,868 + SMc00772 0.28 -0.4
785,868 + SMc00772 0.28 +2.2
785,868 + SMc00772 0.28 +0.5
785,868 + SMc00772 0.28 +2.2
785,868 + SMc00772 0.28 +2.1
785,868 + SMc00772 0.28 +1.3
785,869 - SMc00772 0.28 +2.2
785,869 - SMc00772 0.28 +0.5
785,938 - SMc00772 0.35 +0.0
786,027 + SMc00772 0.45 +0.3
786,028 - SMc00772 0.45 +1.3
786,135 + SMc00772 0.57 +0.8
786,135 + SMc00772 0.57 +1.8
786,135 + SMc00772 0.57 +0.9
786,135 + SMc00772 0.57 -1.5
786,135 + SMc00772 0.57 +0.5
786,135 + SMc00772 0.57 +3.0
786,136 - SMc00772 0.57 -0.2
786,156 + SMc00772 0.59 +1.1
786,157 - SMc00772 0.59 +0.5
786,157 - SMc00772 0.59 +1.9
786,157 - SMc00772 0.59 +1.3
786,157 - SMc00772 0.59 +0.8
786,473 - +0.9
786,483 + +1.2
786,530 + +1.0
786,530 + +0.9
786,530 + +0.7
786,530 + +0.4
786,531 - +1.0
786,588 + +1.2
786,588 + +2.0
786,589 - -0.4

Or see this region's nucleotide sequence