Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1194

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1193 and EX28DRAFT_1194 are separated by 119 nucleotidesEX28DRAFT_1194 and EX28DRAFT_1195 are separated by 113 nucleotidesEX28DRAFT_1195 and EX28DRAFT_1196 overlap by 1 nucleotides EX28DRAFT_1193: EX28DRAFT_1193 - diguanylate cyclase (GGDEF) domain, at 1,212,568 to 1,213,533 _1193 EX28DRAFT_1194: EX28DRAFT_1194 - diguanylate cyclase (GGDEF) domain, at 1,213,653 to 1,215,092 _1194 EX28DRAFT_1195: EX28DRAFT_1195 - Domain of unknown function (DUF4186), at 1,215,206 to 1,215,562 _1195 EX28DRAFT_1196: EX28DRAFT_1196 - L-glutaminase (EC 3.5.1.2), at 1,215,562 to 1,216,488 _1196 Position (kb) 1213 1214 1215 1216Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1212.716 kb on + strand, within EX28DRAFT_1193at 1212.717 kb on - strand, within EX28DRAFT_1193at 1212.717 kb on - strand, within EX28DRAFT_1193at 1212.717 kb on - strand, within EX28DRAFT_1193at 1212.740 kb on + strand, within EX28DRAFT_1193at 1212.906 kb on + strand, within EX28DRAFT_1193at 1213.296 kb on + strand, within EX28DRAFT_1193at 1213.315 kb on - strand, within EX28DRAFT_1193at 1213.534 kb on - strandat 1213.608 kb on - strandat 1213.636 kb on + strandat 1213.654 kb on + strandat 1213.654 kb on + strandat 1213.654 kb on + strandat 1213.654 kb on + strandat 1213.655 kb on - strandat 1213.655 kb on - strandat 1213.837 kb on + strand, within EX28DRAFT_1194at 1213.890 kb on - strand, within EX28DRAFT_1194at 1214.047 kb on + strand, within EX28DRAFT_1194at 1214.047 kb on + strand, within EX28DRAFT_1194at 1214.051 kb on + strand, within EX28DRAFT_1194at 1214.051 kb on + strand, within EX28DRAFT_1194at 1214.051 kb on + strand, within EX28DRAFT_1194at 1214.051 kb on + strand, within EX28DRAFT_1194at 1214.052 kb on - strand, within EX28DRAFT_1194at 1214.052 kb on - strand, within EX28DRAFT_1194at 1214.058 kb on - strand, within EX28DRAFT_1194at 1214.079 kb on - strand, within EX28DRAFT_1194at 1214.143 kb on + strand, within EX28DRAFT_1194at 1214.144 kb on - strand, within EX28DRAFT_1194at 1214.183 kb on - strand, within EX28DRAFT_1194at 1214.219 kb on + strand, within EX28DRAFT_1194at 1214.327 kb on + strand, within EX28DRAFT_1194at 1214.327 kb on + strand, within EX28DRAFT_1194at 1214.328 kb on - strand, within EX28DRAFT_1194at 1214.331 kb on - strand, within EX28DRAFT_1194at 1214.427 kb on - strand, within EX28DRAFT_1194at 1214.529 kb on + strand, within EX28DRAFT_1194at 1214.530 kb on - strand, within EX28DRAFT_1194at 1214.553 kb on - strand, within EX28DRAFT_1194at 1214.553 kb on - strand, within EX28DRAFT_1194at 1214.553 kb on - strand, within EX28DRAFT_1194at 1214.556 kb on + strand, within EX28DRAFT_1194at 1214.556 kb on + strand, within EX28DRAFT_1194at 1214.556 kb on + strand, within EX28DRAFT_1194at 1214.556 kb on + strand, within EX28DRAFT_1194at 1214.556 kb on + strand, within EX28DRAFT_1194at 1214.567 kb on + strand, within EX28DRAFT_1194at 1214.567 kb on + strand, within EX28DRAFT_1194at 1214.568 kb on - strand, within EX28DRAFT_1194at 1214.636 kb on + strand, within EX28DRAFT_1194at 1214.636 kb on + strand, within EX28DRAFT_1194at 1214.636 kb on + strand, within EX28DRAFT_1194at 1214.637 kb on - strand, within EX28DRAFT_1194at 1214.637 kb on - strand, within EX28DRAFT_1194at 1214.704 kb on + strand, within EX28DRAFT_1194at 1214.704 kb on + strand, within EX28DRAFT_1194at 1214.704 kb on + strand, within EX28DRAFT_1194at 1214.704 kb on + strand, within EX28DRAFT_1194at 1214.704 kb on + strand, within EX28DRAFT_1194at 1214.705 kb on - strand, within EX28DRAFT_1194at 1214.709 kb on - strand, within EX28DRAFT_1194at 1214.875 kb on + strand, within EX28DRAFT_1194at 1214.876 kb on - strand, within EX28DRAFT_1194at 1214.876 kb on - strand, within EX28DRAFT_1194at 1214.876 kb on - strand, within EX28DRAFT_1194at 1214.880 kb on + strand, within EX28DRAFT_1194at 1214.881 kb on - strand, within EX28DRAFT_1194at 1214.881 kb on - strand, within EX28DRAFT_1194at 1214.881 kb on - strand, within EX28DRAFT_1194at 1214.891 kb on - strand, within EX28DRAFT_1194at 1214.891 kb on - strand, within EX28DRAFT_1194at 1214.891 kb on - strand, within EX28DRAFT_1194at 1214.914 kb on + strand, within EX28DRAFT_1194at 1214.914 kb on + strand, within EX28DRAFT_1194at 1215.001 kb on + strandat 1215.001 kb on + strandat 1215.002 kb on - strandat 1215.006 kb on + strandat 1215.006 kb on + strandat 1215.007 kb on - strandat 1215.007 kb on - strandat 1215.007 kb on - strandat 1215.093 kb on + strandat 1215.093 kb on + strandat 1215.094 kb on - strandat 1215.097 kb on + strandat 1215.097 kb on + strandat 1215.098 kb on - strandat 1215.098 kb on - strandat 1215.107 kb on + strandat 1215.126 kb on + strandat 1215.153 kb on + strandat 1215.169 kb on + strandat 1215.169 kb on + strandat 1215.169 kb on + strandat 1215.169 kb on + strandat 1215.170 kb on - strandat 1215.170 kb on - strandat 1215.172 kb on - strandat 1215.181 kb on - strandat 1215.193 kb on + strandat 1215.194 kb on - strandat 1215.255 kb on + strand, within EX28DRAFT_1195at 1215.256 kb on - strand, within EX28DRAFT_1195at 1215.296 kb on - strand, within EX28DRAFT_1195at 1215.296 kb on - strand, within EX28DRAFT_1195at 1215.298 kb on + strand, within EX28DRAFT_1195at 1215.298 kb on + strand, within EX28DRAFT_1195at 1215.299 kb on - strand, within EX28DRAFT_1195at 1215.477 kb on + strand, within EX28DRAFT_1195at 1215.478 kb on - strand, within EX28DRAFT_1195at 1215.567 kb on - strandat 1215.569 kb on - strandat 1215.915 kb on - strand, within EX28DRAFT_1196at 1216.031 kb on + strand, within EX28DRAFT_1196

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,212,716 + EX28DRAFT_1193 0.15 -0.0
1,212,717 - EX28DRAFT_1193 0.15 +0.4
1,212,717 - EX28DRAFT_1193 0.15 +0.7
1,212,717 - EX28DRAFT_1193 0.15 -0.2
1,212,740 + EX28DRAFT_1193 0.18 +0.3
1,212,906 + EX28DRAFT_1193 0.35 -0.4
1,213,296 + EX28DRAFT_1193 0.75 +0.4
1,213,315 - EX28DRAFT_1193 0.77 -0.1
1,213,534 - -1.2
1,213,608 - +0.6
1,213,636 + +0.1
1,213,654 + +0.8
1,213,654 + +0.0
1,213,654 + +0.3
1,213,654 + +0.0
1,213,655 - +0.8
1,213,655 - -0.7
1,213,837 + EX28DRAFT_1194 0.13 +0.9
1,213,890 - EX28DRAFT_1194 0.16 +0.2
1,214,047 + EX28DRAFT_1194 0.27 +0.3
1,214,047 + EX28DRAFT_1194 0.27 +0.3
1,214,051 + EX28DRAFT_1194 0.28 -0.4
1,214,051 + EX28DRAFT_1194 0.28 +0.4
1,214,051 + EX28DRAFT_1194 0.28 +1.3
1,214,051 + EX28DRAFT_1194 0.28 -1.5
1,214,052 - EX28DRAFT_1194 0.28 +0.2
1,214,052 - EX28DRAFT_1194 0.28 +0.5
1,214,058 - EX28DRAFT_1194 0.28 +0.7
1,214,079 - EX28DRAFT_1194 0.30 -0.0
1,214,143 + EX28DRAFT_1194 0.34 -0.4
1,214,144 - EX28DRAFT_1194 0.34 -0.2
1,214,183 - EX28DRAFT_1194 0.37 -0.1
1,214,219 + EX28DRAFT_1194 0.39 +0.4
1,214,327 + EX28DRAFT_1194 0.47 -1.1
1,214,327 + EX28DRAFT_1194 0.47 -0.9
1,214,328 - EX28DRAFT_1194 0.47 +0.4
1,214,331 - EX28DRAFT_1194 0.47 +0.1
1,214,427 - EX28DRAFT_1194 0.54 -0.1
1,214,529 + EX28DRAFT_1194 0.61 +0.0
1,214,530 - EX28DRAFT_1194 0.61 -0.3
1,214,553 - EX28DRAFT_1194 0.62 -0.8
1,214,553 - EX28DRAFT_1194 0.62 +0.3
1,214,553 - EX28DRAFT_1194 0.62 -0.9
1,214,556 + EX28DRAFT_1194 0.63 -0.8
1,214,556 + EX28DRAFT_1194 0.63 +0.2
1,214,556 + EX28DRAFT_1194 0.63 +2.3
1,214,556 + EX28DRAFT_1194 0.63 +0.6
1,214,556 + EX28DRAFT_1194 0.63 -0.3
1,214,567 + EX28DRAFT_1194 0.63 -2.0
1,214,567 + EX28DRAFT_1194 0.63 +2.0
1,214,568 - EX28DRAFT_1194 0.64 +0.3
1,214,636 + EX28DRAFT_1194 0.68 -0.8
1,214,636 + EX28DRAFT_1194 0.68 -0.0
1,214,636 + EX28DRAFT_1194 0.68 +0.1
1,214,637 - EX28DRAFT_1194 0.68 -0.1
1,214,637 - EX28DRAFT_1194 0.68 +0.4
1,214,704 + EX28DRAFT_1194 0.73 +0.2
1,214,704 + EX28DRAFT_1194 0.73 +0.2
1,214,704 + EX28DRAFT_1194 0.73 +1.6
1,214,704 + EX28DRAFT_1194 0.73 +0.8
1,214,704 + EX28DRAFT_1194 0.73 +0.0
1,214,705 - EX28DRAFT_1194 0.73 +0.0
1,214,709 - EX28DRAFT_1194 0.73 +0.5
1,214,875 + EX28DRAFT_1194 0.85 -0.1
1,214,876 - EX28DRAFT_1194 0.85 +0.4
1,214,876 - EX28DRAFT_1194 0.85 -0.3
1,214,876 - EX28DRAFT_1194 0.85 -0.7
1,214,880 + EX28DRAFT_1194 0.85 -2.4
1,214,881 - EX28DRAFT_1194 0.85 +0.2
1,214,881 - EX28DRAFT_1194 0.85 -2.9
1,214,881 - EX28DRAFT_1194 0.85 -1.1
1,214,891 - EX28DRAFT_1194 0.86 -0.2
1,214,891 - EX28DRAFT_1194 0.86 -0.3
1,214,891 - EX28DRAFT_1194 0.86 +0.9
1,214,914 + EX28DRAFT_1194 0.88 +0.6
1,214,914 + EX28DRAFT_1194 0.88 +0.1
1,215,001 + -0.4
1,215,001 + +0.3
1,215,002 - +0.3
1,215,006 + +0.1
1,215,006 + +0.1
1,215,007 - +0.0
1,215,007 - -0.6
1,215,007 - -0.5
1,215,093 + +0.6
1,215,093 + -2.4
1,215,094 - -0.1
1,215,097 + +0.0
1,215,097 + +0.0
1,215,098 - -0.7
1,215,098 - +0.5
1,215,107 + -0.3
1,215,126 + +0.1
1,215,153 + +0.1
1,215,169 + +0.5
1,215,169 + -0.4
1,215,169 + +2.2
1,215,169 + -1.1
1,215,170 - -0.0
1,215,170 - -0.3
1,215,172 - +0.2
1,215,181 - -0.5
1,215,193 + +0.0
1,215,194 - +1.0
1,215,255 + EX28DRAFT_1195 0.14 +0.3
1,215,256 - EX28DRAFT_1195 0.14 -0.7
1,215,296 - EX28DRAFT_1195 0.25 +0.1
1,215,296 - EX28DRAFT_1195 0.25 +0.2
1,215,298 + EX28DRAFT_1195 0.26 +0.5
1,215,298 + EX28DRAFT_1195 0.26 -1.1
1,215,299 - EX28DRAFT_1195 0.26 +0.6
1,215,477 + EX28DRAFT_1195 0.76 -0.1
1,215,478 - EX28DRAFT_1195 0.76 -0.0
1,215,567 - -0.9
1,215,569 - +0.2
1,215,915 - EX28DRAFT_1196 0.38 +0.6
1,216,031 + EX28DRAFT_1196 0.51 +0.0

Or see this region's nucleotide sequence