Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0240 and EX28DRAFT_0241 are separated by 482 nucleotides EX28DRAFT_0241 and EX28DRAFT_0242 are separated by 786 nucleotides
EX28DRAFT_0240: EX28DRAFT_0240 - Aspartate/tyrosine/aromatic aminotransferase, at 193,111 to 194,349
_0240
EX28DRAFT_0241: EX28DRAFT_0241 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase, at 194,832 to 195,749
_0241
EX28DRAFT_0242: EX28DRAFT_0242 - type VI secretion protein, VC_A0107 family, at 196,536 to 197,033
_0242
Position (kb) 194
195
196 Strain fitness (log2 ratio) -1
0
1 at 193.867 kb on - strand, within EX28DRAFT_0240 at 193.875 kb on + strand, within EX28DRAFT_0240 at 193.875 kb on + strand, within EX28DRAFT_0240 at 193.925 kb on - strand, within EX28DRAFT_0240 at 193.938 kb on + strand, within EX28DRAFT_0240 at 194.018 kb on - strand, within EX28DRAFT_0240 at 194.019 kb on + strand, within EX28DRAFT_0240 at 194.019 kb on + strand, within EX28DRAFT_0240 at 194.020 kb on - strand, within EX28DRAFT_0240 at 194.095 kb on + strand, within EX28DRAFT_0240 at 194.096 kb on - strand, within EX28DRAFT_0240 at 194.096 kb on - strand, within EX28DRAFT_0240 at 194.122 kb on + strand, within EX28DRAFT_0240 at 194.122 kb on + strand, within EX28DRAFT_0240 at 194.123 kb on - strand, within EX28DRAFT_0240 at 194.403 kb on + strand at 194.435 kb on + strand at 194.436 kb on - strand at 194.508 kb on + strand at 194.508 kb on + strand at 194.531 kb on + strand at 194.634 kb on + strand at 194.767 kb on + strand at 194.893 kb on + strand at 194.971 kb on + strand, within EX28DRAFT_0241 at 195.015 kb on - strand, within EX28DRAFT_0241 at 195.138 kb on - strand, within EX28DRAFT_0241 at 195.138 kb on - strand, within EX28DRAFT_0241 at 195.145 kb on + strand, within EX28DRAFT_0241 at 195.216 kb on - strand, within EX28DRAFT_0241 at 195.273 kb on - strand, within EX28DRAFT_0241 at 195.295 kb on + strand, within EX28DRAFT_0241 at 195.296 kb on - strand, within EX28DRAFT_0241 at 195.296 kb on - strand, within EX28DRAFT_0241 at 195.353 kb on + strand, within EX28DRAFT_0241 at 195.353 kb on + strand, within EX28DRAFT_0241 at 195.545 kb on - strand, within EX28DRAFT_0241 at 195.679 kb on - strand at 195.698 kb on + strand at 195.698 kb on + strand at 195.699 kb on - strand at 195.756 kb on - strand at 195.763 kb on - strand at 195.763 kb on - strand at 195.775 kb on + strand at 195.782 kb on - strand at 195.900 kb on + strand at 195.901 kb on - strand at 195.911 kb on + strand at 195.912 kb on - strand at 195.916 kb on + strand at 195.924 kb on - strand at 195.924 kb on - strand at 196.445 kb on + strand at 196.595 kb on - strand, within EX28DRAFT_0242
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 193,867 - EX28DRAFT_0240 0.61 -0.9 193,875 + EX28DRAFT_0240 0.62 +0.3 193,875 + EX28DRAFT_0240 0.62 +0.1 193,925 - EX28DRAFT_0240 0.66 -0.3 193,938 + EX28DRAFT_0240 0.67 -0.0 194,018 - EX28DRAFT_0240 0.73 -0.7 194,019 + EX28DRAFT_0240 0.73 +0.6 194,019 + EX28DRAFT_0240 0.73 +0.8 194,020 - EX28DRAFT_0240 0.73 -0.1 194,095 + EX28DRAFT_0240 0.79 +0.3 194,096 - EX28DRAFT_0240 0.79 +1.0 194,096 - EX28DRAFT_0240 0.79 -0.7 194,122 + EX28DRAFT_0240 0.82 -0.9 194,122 + EX28DRAFT_0240 0.82 +0.2 194,123 - EX28DRAFT_0240 0.82 +1.2 194,403 + -1.6 194,435 + +0.8 194,436 - +0.9 194,508 + +1.6 194,508 + +0.4 194,531 + +0.1 194,634 + +0.5 194,767 + -0.2 194,893 + +0.4 194,971 + EX28DRAFT_0241 0.15 +0.7 195,015 - EX28DRAFT_0241 0.20 +0.2 195,138 - EX28DRAFT_0241 0.33 -0.6 195,138 - EX28DRAFT_0241 0.33 +0.2 195,145 + EX28DRAFT_0241 0.34 -0.3 195,216 - EX28DRAFT_0241 0.42 +0.1 195,273 - EX28DRAFT_0241 0.48 +0.2 195,295 + EX28DRAFT_0241 0.50 +0.1 195,296 - EX28DRAFT_0241 0.51 +1.0 195,296 - EX28DRAFT_0241 0.51 +0.9 195,353 + EX28DRAFT_0241 0.57 +0.3 195,353 + EX28DRAFT_0241 0.57 +0.2 195,545 - EX28DRAFT_0241 0.78 +0.2 195,679 - +0.2 195,698 + -1.6 195,698 + +0.0 195,699 - +0.4 195,756 - -0.1 195,763 - -0.3 195,763 - +0.2 195,775 + -0.1 195,782 - +0.7 195,900 + -0.2 195,901 - +0.2 195,911 + +0.1 195,912 - -0.5 195,916 + -0.1 195,924 - +0.2 195,924 - -0.1 196,445 + +0.2 196,595 - EX28DRAFT_0242 0.12 -1.1
Or see this region's nucleotide sequence