Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3512

Experiment: KB with Phloretin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3510 and Psyr_3511 are separated by 167 nucleotidesPsyr_3511 and Psyr_3512 overlap by 4 nucleotidesPsyr_3512 and Psyr_3513 are separated by 11 nucleotides Psyr_3510: Psyr_3510 - conserved hypothetical protein, at 4,185,493 to 4,185,756 _3510 Psyr_3511: Psyr_3511 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,185,924 to 4,186,586 _3511 Psyr_3512: Psyr_3512 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,186,583 to 4,187,956 _3512 Psyr_3513: Psyr_3513 - FAD dependent oxidoreductase, at 4,187,968 to 4,189,254 _3513 Position (kb) 4186 4187 4188Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4185.777 kb on + strandat 4185.788 kb on + strandat 4185.807 kb on + strandat 4185.818 kb on + strandat 4185.819 kb on - strandat 4185.821 kb on + strandat 4185.821 kb on + strandat 4185.821 kb on + strandat 4185.822 kb on - strandat 4185.822 kb on - strandat 4185.822 kb on - strandat 4185.996 kb on + strand, within Psyr_3511at 4185.996 kb on + strand, within Psyr_3511at 4185.997 kb on - strand, within Psyr_3511at 4185.997 kb on - strand, within Psyr_3511at 4185.997 kb on - strand, within Psyr_3511at 4185.998 kb on + strand, within Psyr_3511at 4186.184 kb on + strand, within Psyr_3511at 4186.215 kb on + strand, within Psyr_3511at 4186.366 kb on + strand, within Psyr_3511at 4186.387 kb on - strand, within Psyr_3511at 4186.458 kb on + strand, within Psyr_3511at 4186.459 kb on - strand, within Psyr_3511at 4186.459 kb on - strand, within Psyr_3511at 4186.563 kb on + strandat 4186.593 kb on + strandat 4186.698 kb on - strandat 4186.785 kb on - strand, within Psyr_3512at 4187.040 kb on + strand, within Psyr_3512at 4187.041 kb on - strand, within Psyr_3512at 4187.041 kb on - strand, within Psyr_3512at 4187.041 kb on - strand, within Psyr_3512at 4187.041 kb on - strand, within Psyr_3512at 4187.215 kb on - strand, within Psyr_3512at 4187.810 kb on + strand, within Psyr_3512at 4187.810 kb on + strand, within Psyr_3512at 4187.810 kb on + strand, within Psyr_3512at 4187.811 kb on - strand, within Psyr_3512at 4188.284 kb on + strand, within Psyr_3513at 4188.284 kb on + strand, within Psyr_3513at 4188.284 kb on + strand, within Psyr_3513at 4188.284 kb on + strand, within Psyr_3513at 4188.284 kb on + strand, within Psyr_3513at 4188.284 kb on + strand, within Psyr_3513at 4188.284 kb on + strand, within Psyr_3513at 4188.284 kb on + strand, within Psyr_3513at 4188.285 kb on - strand, within Psyr_3513at 4188.285 kb on - strand, within Psyr_3513at 4188.285 kb on - strand, within Psyr_3513at 4188.285 kb on - strand, within Psyr_3513at 4188.285 kb on - strand, within Psyr_3513at 4188.285 kb on - strand, within Psyr_3513at 4188.285 kb on - strand, within Psyr_3513at 4188.332 kb on + strand, within Psyr_3513at 4188.411 kb on + strand, within Psyr_3513at 4188.485 kb on + strand, within Psyr_3513at 4188.488 kb on + strand, within Psyr_3513at 4188.488 kb on + strand, within Psyr_3513at 4188.488 kb on + strand, within Psyr_3513at 4188.488 kb on + strand, within Psyr_3513at 4188.488 kb on + strand, within Psyr_3513at 4188.489 kb on - strand, within Psyr_3513at 4188.489 kb on - strand, within Psyr_3513at 4188.489 kb on - strand, within Psyr_3513at 4188.489 kb on - strand, within Psyr_3513at 4188.489 kb on - strand, within Psyr_3513at 4188.491 kb on + strand, within Psyr_3513at 4188.539 kb on + strand, within Psyr_3513at 4188.540 kb on - strand, within Psyr_3513at 4188.574 kb on + strand, within Psyr_3513at 4188.574 kb on + strand, within Psyr_3513at 4188.575 kb on - strand, within Psyr_3513at 4188.575 kb on - strand, within Psyr_3513at 4188.575 kb on - strand, within Psyr_3513at 4188.575 kb on - strand, within Psyr_3513at 4188.695 kb on + strand, within Psyr_3513at 4188.695 kb on + strand, within Psyr_3513at 4188.695 kb on + strand, within Psyr_3513at 4188.696 kb on - strand, within Psyr_3513at 4188.696 kb on - strand, within Psyr_3513at 4188.696 kb on - strand, within Psyr_3513

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Phloretin 250 ug/ml
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4,185,777 + +0.2
4,185,788 + -0.1
4,185,807 + -0.1
4,185,818 + -1.1
4,185,819 - +1.9
4,185,821 + +1.2
4,185,821 + -0.0
4,185,821 + -0.4
4,185,822 - -0.1
4,185,822 - +0.6
4,185,822 - +0.4
4,185,996 + Psyr_3511 0.11 +0.3
4,185,996 + Psyr_3511 0.11 +0.5
4,185,997 - Psyr_3511 0.11 -1.9
4,185,997 - Psyr_3511 0.11 +0.2
4,185,997 - Psyr_3511 0.11 -0.2
4,185,998 + Psyr_3511 0.11 +0.5
4,186,184 + Psyr_3511 0.39 +1.5
4,186,215 + Psyr_3511 0.44 +0.8
4,186,366 + Psyr_3511 0.67 -0.7
4,186,387 - Psyr_3511 0.70 -0.6
4,186,458 + Psyr_3511 0.81 -0.1
4,186,459 - Psyr_3511 0.81 +0.8
4,186,459 - Psyr_3511 0.81 +0.2
4,186,563 + +0.4
4,186,593 + +1.7
4,186,698 - -0.6
4,186,785 - Psyr_3512 0.15 +1.2
4,187,040 + Psyr_3512 0.33 +0.4
4,187,041 - Psyr_3512 0.33 +2.9
4,187,041 - Psyr_3512 0.33 +1.2
4,187,041 - Psyr_3512 0.33 -0.5
4,187,041 - Psyr_3512 0.33 +0.5
4,187,215 - Psyr_3512 0.46 +0.5
4,187,810 + Psyr_3512 0.89 +1.0
4,187,810 + Psyr_3512 0.89 +2.1
4,187,810 + Psyr_3512 0.89 +0.6
4,187,811 - Psyr_3512 0.89 -0.2
4,188,284 + Psyr_3513 0.25 -0.9
4,188,284 + Psyr_3513 0.25 -0.8
4,188,284 + Psyr_3513 0.25 +0.5
4,188,284 + Psyr_3513 0.25 -0.3
4,188,284 + Psyr_3513 0.25 +0.3
4,188,284 + Psyr_3513 0.25 +1.3
4,188,284 + Psyr_3513 0.25 -0.1
4,188,284 + Psyr_3513 0.25 +0.8
4,188,285 - Psyr_3513 0.25 +0.5
4,188,285 - Psyr_3513 0.25 -1.0
4,188,285 - Psyr_3513 0.25 +1.9
4,188,285 - Psyr_3513 0.25 -0.1
4,188,285 - Psyr_3513 0.25 -0.5
4,188,285 - Psyr_3513 0.25 -0.2
4,188,285 - Psyr_3513 0.25 -0.3
4,188,332 + Psyr_3513 0.28 +0.3
4,188,411 + Psyr_3513 0.34 -0.0
4,188,485 + Psyr_3513 0.40 +0.1
4,188,488 + Psyr_3513 0.40 +1.0
4,188,488 + Psyr_3513 0.40 +0.2
4,188,488 + Psyr_3513 0.40 +0.1
4,188,488 + Psyr_3513 0.40 +0.3
4,188,488 + Psyr_3513 0.40 -0.4
4,188,489 - Psyr_3513 0.40 +1.4
4,188,489 - Psyr_3513 0.40 +0.8
4,188,489 - Psyr_3513 0.40 +1.4
4,188,489 - Psyr_3513 0.40 +0.2
4,188,489 - Psyr_3513 0.40 +1.1
4,188,491 + Psyr_3513 0.41 +0.4
4,188,539 + Psyr_3513 0.44 -0.5
4,188,540 - Psyr_3513 0.44 +0.2
4,188,574 + Psyr_3513 0.47 -0.2
4,188,574 + Psyr_3513 0.47 +2.0
4,188,575 - Psyr_3513 0.47 -0.8
4,188,575 - Psyr_3513 0.47 +0.3
4,188,575 - Psyr_3513 0.47 -0.6
4,188,575 - Psyr_3513 0.47 -0.5
4,188,695 + Psyr_3513 0.56 +0.5
4,188,695 + Psyr_3513 0.56 +0.4
4,188,695 + Psyr_3513 0.56 -0.5
4,188,696 - Psyr_3513 0.57 +0.7
4,188,696 - Psyr_3513 0.57 -0.9
4,188,696 - Psyr_3513 0.57 -0.3

Or see this region's nucleotide sequence