Strain Fitness in Pseudomonas sp. S08-1 around OH686_17070

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_17065 and OH686_17070 are separated by 10 nucleotidesOH686_17070 and OH686_17075 are separated by 185 nucleotides OH686_17065: OH686_17065 - chaperone protein DnaJ, at 3,562,718 to 3,563,848 _17065 OH686_17070: OH686_17070 - 4-hydroxy-tetrahydrodipicolinate reductase, at 3,563,859 to 3,564,662 _17070 OH686_17075: OH686_17075 - Carbamoyl-phosphate synthase small chain , at 3,564,848 to 3,565,984 _17075 Position (kb) 3563 3564 3565Strain fitness (log2 ratio) -3 -2 -1 0 1at 3563.519 kb on + strand, within OH686_17065at 3563.520 kb on - strand, within OH686_17065at 3563.520 kb on - strand, within OH686_17065at 3563.846 kb on + strandat 3563.846 kb on + strandat 3563.846 kb on + strandat 3563.846 kb on + strandat 3563.846 kb on + strandat 3563.846 kb on + strandat 3563.846 kb on + strandat 3563.846 kb on + strandat 3563.846 kb on + strandat 3563.846 kb on + strandat 3563.846 kb on + strandat 3563.847 kb on - strandat 3563.847 kb on - strandat 3563.847 kb on - strandat 3563.847 kb on - strandat 3563.847 kb on - strandat 3563.847 kb on - strandat 3563.847 kb on - strandat 3563.847 kb on - strandat 3563.847 kb on - strandat 3563.847 kb on - strandat 3563.847 kb on - strandat 3563.847 kb on - strandat 3563.847 kb on - strandat 3563.847 kb on - strandat 3563.858 kb on + strandat 3563.858 kb on + strandat 3563.858 kb on + strandat 3563.858 kb on + strandat 3563.859 kb on - strandat 3564.726 kb on + strandat 3564.727 kb on - strandat 3564.744 kb on + strandat 3564.763 kb on + strandat 3564.786 kb on + strandat 3564.786 kb on + strandat 3564.786 kb on + strandat 3564.786 kb on + strandat 3564.786 kb on + strandat 3564.786 kb on + strandat 3564.786 kb on + strandat 3564.786 kb on + strandat 3564.786 kb on + strandat 3564.787 kb on - strandat 3564.787 kb on - strandat 3564.787 kb on - strandat 3564.787 kb on - strandat 3564.787 kb on - strandat 3564.787 kb on - strandat 3564.787 kb on - strandat 3564.787 kb on - strandat 3564.787 kb on - strandat 3564.805 kb on - strandat 3564.834 kb on + strandat 3564.834 kb on + strandat 3564.834 kb on + strandat 3564.834 kb on + strandat 3564.834 kb on + strandat 3564.834 kb on + strandat 3564.835 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,563,519 + OH686_17065 0.71 +0.8
3,563,520 - OH686_17065 0.71 -1.1
3,563,520 - OH686_17065 0.71 -1.1
3,563,846 + -0.5
3,563,846 + -0.8
3,563,846 + +0.6
3,563,846 + +0.2
3,563,846 + -0.4
3,563,846 + +0.7
3,563,846 + -0.0
3,563,846 + -0.7
3,563,846 + +0.2
3,563,846 + +1.1
3,563,846 + -0.4
3,563,847 - -0.1
3,563,847 - +0.2
3,563,847 - +0.7
3,563,847 - +0.2
3,563,847 - +0.2
3,563,847 - -2.8
3,563,847 - +1.3
3,563,847 - +0.6
3,563,847 - -1.0
3,563,847 - -0.2
3,563,847 - +1.0
3,563,847 - -1.1
3,563,847 - -0.8
3,563,847 - +1.0
3,563,858 + +1.6
3,563,858 + -1.2
3,563,858 + -0.3
3,563,858 + +0.4
3,563,859 - -0.0
3,564,726 + -0.8
3,564,727 - -2.5
3,564,744 + +0.7
3,564,763 + -0.7
3,564,786 + -0.3
3,564,786 + -0.8
3,564,786 + +0.6
3,564,786 + -0.7
3,564,786 + -0.8
3,564,786 + -1.3
3,564,786 + -0.9
3,564,786 + +0.4
3,564,786 + +1.0
3,564,787 - -0.8
3,564,787 - +0.7
3,564,787 - +0.0
3,564,787 - -0.7
3,564,787 - -0.6
3,564,787 - -0.0
3,564,787 - -0.3
3,564,787 - +0.2
3,564,787 - +0.5
3,564,805 - +1.0
3,564,834 + -0.4
3,564,834 + -0.3
3,564,834 + -0.9
3,564,834 + -0.2
3,564,834 + -0.0
3,564,834 + +0.2
3,564,835 - -0.5

Or see this region's nucleotide sequence