Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3530 and EX28DRAFT_3531 are separated by 44 nucleotides EX28DRAFT_3531 and EX28DRAFT_3532 overlap by 1 nucleotides EX28DRAFT_3532 and EX28DRAFT_3533 are separated by 411 nucleotides
EX28DRAFT_3530: EX28DRAFT_3530 - NAD-dependent aldehyde dehydrogenases, at 192,822 to 194,192
_3530
EX28DRAFT_3531: EX28DRAFT_3531 - hypothetical protein, at 194,237 to 194,557
_3531
EX28DRAFT_3532: EX28DRAFT_3532 - YfaZ precursor, at 194,557 to 195,102
_3532
EX28DRAFT_3533: EX28DRAFT_3533 - Uncharacterized protein conserved in bacteria, at 195,514 to 196,872
_3533
Position (kb) 194
195
196 Strain fitness (log2 ratio) -2
-1
0
1 at 193.629 kb on - strand, within EX28DRAFT_3530 at 193.809 kb on + strand, within EX28DRAFT_3530 at 193.809 kb on + strand, within EX28DRAFT_3530 at 193.869 kb on - strand, within EX28DRAFT_3530 at 193.869 kb on - strand, within EX28DRAFT_3530 at 193.869 kb on - strand, within EX28DRAFT_3530 at 193.891 kb on - strand, within EX28DRAFT_3530 at 193.927 kb on - strand, within EX28DRAFT_3530 at 193.977 kb on + strand, within EX28DRAFT_3530 at 194.058 kb on + strand at 194.058 kb on + strand at 194.059 kb on - strand at 194.059 kb on - strand at 194.059 kb on - strand at 194.186 kb on + strand at 194.187 kb on - strand at 194.190 kb on + strand at 194.289 kb on - strand, within EX28DRAFT_3531 at 194.293 kb on + strand, within EX28DRAFT_3531 at 194.293 kb on + strand, within EX28DRAFT_3531 at 194.293 kb on + strand, within EX28DRAFT_3531 at 194.294 kb on - strand, within EX28DRAFT_3531 at 194.329 kb on - strand, within EX28DRAFT_3531 at 194.341 kb on + strand, within EX28DRAFT_3531 at 194.579 kb on - strand at 194.582 kb on + strand at 194.582 kb on + strand at 194.670 kb on + strand, within EX28DRAFT_3532 at 194.670 kb on + strand, within EX28DRAFT_3532 at 194.709 kb on - strand, within EX28DRAFT_3532 at 194.747 kb on + strand, within EX28DRAFT_3532 at 194.748 kb on - strand, within EX28DRAFT_3532 at 194.748 kb on - strand, within EX28DRAFT_3532 at 194.964 kb on - strand, within EX28DRAFT_3532 at 195.107 kb on + strand at 195.296 kb on - strand at 195.417 kb on + strand at 195.419 kb on + strand at 195.419 kb on + strand at 195.419 kb on + strand at 195.419 kb on + strand at 195.420 kb on - strand at 195.420 kb on - strand at 195.497 kb on - strand at 195.497 kb on - strand at 195.507 kb on + strand at 195.513 kb on + strand at 195.514 kb on - strand at 195.631 kb on + strand at 195.699 kb on + strand, within EX28DRAFT_3533 at 195.794 kb on + strand, within EX28DRAFT_3533 at 195.889 kb on - strand, within EX28DRAFT_3533
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 193,629 - EX28DRAFT_3530 0.59 +0.5 193,809 + EX28DRAFT_3530 0.72 -0.2 193,809 + EX28DRAFT_3530 0.72 -0.8 193,869 - EX28DRAFT_3530 0.76 +0.1 193,869 - EX28DRAFT_3530 0.76 +0.5 193,869 - EX28DRAFT_3530 0.76 +0.1 193,891 - EX28DRAFT_3530 0.78 -0.0 193,927 - EX28DRAFT_3530 0.81 +0.1 193,977 + EX28DRAFT_3530 0.84 -1.0 194,058 + -0.3 194,058 + -1.2 194,059 - +1.4 194,059 - +1.4 194,059 - +0.5 194,186 + -0.8 194,187 - -1.7 194,190 + -0.1 194,289 - EX28DRAFT_3531 0.16 -1.5 194,293 + EX28DRAFT_3531 0.17 -0.3 194,293 + EX28DRAFT_3531 0.17 +0.2 194,293 + EX28DRAFT_3531 0.17 -0.6 194,294 - EX28DRAFT_3531 0.18 +0.1 194,329 - EX28DRAFT_3531 0.29 +0.1 194,341 + EX28DRAFT_3531 0.32 +0.9 194,579 - -0.2 194,582 + -0.0 194,582 + +0.6 194,670 + EX28DRAFT_3532 0.21 +0.2 194,670 + EX28DRAFT_3532 0.21 -2.2 194,709 - EX28DRAFT_3532 0.28 -0.9 194,747 + EX28DRAFT_3532 0.35 -0.4 194,748 - EX28DRAFT_3532 0.35 -0.4 194,748 - EX28DRAFT_3532 0.35 -0.6 194,964 - EX28DRAFT_3532 0.75 -0.5 195,107 + -0.7 195,296 - -0.3 195,417 + +1.2 195,419 + +1.0 195,419 + -0.0 195,419 + -0.6 195,419 + +0.2 195,420 - -2.4 195,420 - +0.1 195,497 - +0.3 195,497 - -0.2 195,507 + -0.1 195,513 + -0.6 195,514 - -0.5 195,631 + +0.7 195,699 + EX28DRAFT_3533 0.14 -0.3 195,794 + EX28DRAFT_3533 0.21 -0.0 195,889 - EX28DRAFT_3533 0.28 +0.1
Or see this region's nucleotide sequence