Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3376

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3374 and EX28DRAFT_3375 are separated by 192 nucleotidesEX28DRAFT_3375 and EX28DRAFT_3376 are separated by 38 nucleotidesEX28DRAFT_3376 and EX28DRAFT_3377 are separated by 66 nucleotidesEX28DRAFT_3377 and EX28DRAFT_3378 are separated by 85 nucleotides EX28DRAFT_3374: EX28DRAFT_3374 - Adenylosuccinate synthetase (EC 6.3.4.4), at 41,910 to 43,250 _3374 EX28DRAFT_3375: EX28DRAFT_3375 - transcriptional regulator, BadM/Rrf2 family, at 43,443 to 43,868 _3375 EX28DRAFT_3376: EX28DRAFT_3376 - ribonuclease R, at 43,907 to 46,351 _3376 EX28DRAFT_3377: EX28DRAFT_3377 - rRNA methylase, putative, group 3, at 46,418 to 47,152 _3377 EX28DRAFT_3378: EX28DRAFT_3378 - Arabinose efflux permease, at 47,238 to 48,512 _3378 Position (kb) 43 44 45 46 47Strain fitness (log2 ratio) -3 -2 -1 0 1at 43.248 kb on + strandat 43.298 kb on + strandat 43.353 kb on + strandat 43.391 kb on + strandat 43.399 kb on - strandat 43.474 kb on + strandat 43.565 kb on + strand, within EX28DRAFT_3375at 43.661 kb on + strand, within EX28DRAFT_3375at 43.806 kb on + strand, within EX28DRAFT_3375at 43.847 kb on + strandat 43.852 kb on + strandat 43.852 kb on + strandat 43.852 kb on + strandat 44.037 kb on + strandat 44.038 kb on - strandat 44.526 kb on + strand, within EX28DRAFT_3376at 44.526 kb on + strand, within EX28DRAFT_3376at 44.756 kb on + strand, within EX28DRAFT_3376at 44.811 kb on + strand, within EX28DRAFT_3376at 44.812 kb on - strand, within EX28DRAFT_3376at 44.819 kb on + strand, within EX28DRAFT_3376at 44.820 kb on - strand, within EX28DRAFT_3376at 44.876 kb on + strand, within EX28DRAFT_3376at 45.053 kb on + strand, within EX28DRAFT_3376at 45.054 kb on - strand, within EX28DRAFT_3376at 45.070 kb on + strand, within EX28DRAFT_3376at 45.124 kb on + strand, within EX28DRAFT_3376at 45.235 kb on + strand, within EX28DRAFT_3376at 45.292 kb on + strand, within EX28DRAFT_3376at 45.388 kb on + strand, within EX28DRAFT_3376at 45.481 kb on + strand, within EX28DRAFT_3376at 45.605 kb on - strand, within EX28DRAFT_3376at 46.397 kb on + strandat 46.402 kb on - strandat 46.402 kb on - strandat 46.434 kb on - strandat 46.516 kb on + strand, within EX28DRAFT_3377at 46.957 kb on + strand, within EX28DRAFT_3377at 46.957 kb on + strand, within EX28DRAFT_3377at 47.321 kb on - strandat 47.323 kb on + strandat 47.323 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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43,248 + +0.1
43,298 + +0.3
43,353 + -0.1
43,391 + +1.6
43,399 - -0.4
43,474 + +0.1
43,565 + EX28DRAFT_3375 0.29 -0.0
43,661 + EX28DRAFT_3375 0.51 -2.0
43,806 + EX28DRAFT_3375 0.85 +0.1
43,847 + +0.4
43,852 + +0.3
43,852 + -2.3
43,852 + +0.8
44,037 + +0.0
44,038 - -2.0
44,526 + EX28DRAFT_3376 0.25 -0.7
44,526 + EX28DRAFT_3376 0.25 -2.3
44,756 + EX28DRAFT_3376 0.35 -0.1
44,811 + EX28DRAFT_3376 0.37 -2.9
44,812 - EX28DRAFT_3376 0.37 -2.9
44,819 + EX28DRAFT_3376 0.37 -2.8
44,820 - EX28DRAFT_3376 0.37 -1.1
44,876 + EX28DRAFT_3376 0.40 -0.2
45,053 + EX28DRAFT_3376 0.47 -1.7
45,054 - EX28DRAFT_3376 0.47 -2.7
45,070 + EX28DRAFT_3376 0.48 -3.2
45,124 + EX28DRAFT_3376 0.50 -0.3
45,235 + EX28DRAFT_3376 0.54 -1.8
45,292 + EX28DRAFT_3376 0.57 -2.5
45,388 + EX28DRAFT_3376 0.61 -3.0
45,481 + EX28DRAFT_3376 0.64 -2.9
45,605 - EX28DRAFT_3376 0.69 -2.3
46,397 + +0.5
46,402 - +0.4
46,402 - -0.3
46,434 - -0.2
46,516 + EX28DRAFT_3377 0.13 +0.1
46,957 + EX28DRAFT_3377 0.73 -0.1
46,957 + EX28DRAFT_3377 0.73 +0.4
47,321 - -0.5
47,323 + +0.7
47,323 + +0.3

Or see this region's nucleotide sequence